GBrowse Details

Vigan.09G039400.01

Basic Information:
Name: Vigan.09G039400.01
Multiple alignment
Variant Information
Position: Chr09:4553486..4557463 (- strand)
Length: 3978
Functional Information:
Description: Similar to Peptidyl-prolyl cis-trans isomerase. [V7AKW6, Phaseolus vulgaris]
GO: Biological Process: protein folding (GO:0006457)
InterPro: Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain (IPR001179)
Peptidyl-prolyl cis-trans isomerase, FKBP-type (IPR023566)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:194.99,168.65,114.86,88.02,149.77,276.44,95.10,87.45
Arabidopsis thaliana homolog: AT5G48580.1
Automatic updates:
Name: NM_001249050 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305479 (LOC100305479), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:4553486..4553640 (- strand)
Length: 155
Type: three_prime_UTR
Position: Chr09:4553641..4553729 (- strand)
Length: 89
Type: CDS
Position: Chr09:4554349..4554453 (- strand)
Length: 105
Type: CDS
Position: Chr09:4555042..4555132 (- strand)
Length: 91
Type: CDS
Position: Chr09:4555870..4555932 (- strand)
Length: 63
Type: CDS
Position: Chr09:4556901..4556950 (- strand)
Length: 50
Type: CDS
Position: Chr09:4557150..4557216 (- strand)
Length: 67
Type: CDS
Position: Chr09:4557217..4557463 (- strand)
Length: 247
Type: five_prime_UTR


>Vigan.09G039400.01
CAATAATATA TTTTTCTTTT ACAGAGAATC CCAATTATAA GATACTAATA TAAACCATTT TGAATGTTGA GTTCACCCGA
GTCCGTATCA CGCGGGTTAA TTCCCCTAAC CCGAAAGTTT CCACAATTCT CACTTGTCCT GTTATTACAG TCTTATATAA
CACCAACACC GACTCGCCCT CTGTCTCCCA TTCAGAGAGA AACAAAATCA GCGACTGACT TAGCAAAGGA AAAAAAAAGA
AAGAAAAATG AGTTTCCCTT CTTCCATGAA CGCCGTTACC CTTCTTCTCT TCTTCCTTTT CGTTTCCGTA TTAGTTTGTG
CCAAGAAGAC GGGTGATGTG ACGGAGTTGC AGATAGGCGT TAAGCATAAA CCAGCAACAT GTGAAGTTCA GGCACACAAA
GGTGATAAAG TCAAAGTACA CTATCGGGGA AAACTCACTG ATGGAACTGT TTTCGATTCT AGCTTCGAAA GAAAAAATCC
CATTGAATTC GAGCTTGGTG CTGGTCAAGT GATCAAAGGG TGGGACCAGG GATTATTGGG AATGTGTCTT GGTGAGAAGA
GGAAGCTGAA AATACCATCA AGACTGGGCT ATGGAGATCA GGGTTCCCAA CCCTCTATTC CAGGTGGTGC AACACTGATA
TTTGACACTG AGCTGGTGGG AGTGAACGGT GTAAGTTTGG ATGAAGAGGA TAAGACGGGC TCTGAACTGT AGACAAATAG
AAAGAAATGG AATGTTGAGA CTGTTTGCTA TCTTAGCTTA TTTTTGTTCT TCAATAATGA TTATTTTTGT TCTATAATGA
TTTTATGACC CGAGGTTTCA CTGTTTAATT CTGAGCTTAA TTTAGAAAGA TTTAGACTCC CTTCCCG

>Vigan.09G039400.01
ATGAGTTTCC CTTCTTCCAT GAACGCCGTT ACCCTTCTTC TCTTCTTCCT TTTCGTTTCC GTATTAGTTT GTGCCAAGAA
GACGGGTGAT GTGACGGAGT TGCAGATAGG CGTTAAGCAT AAACCAGCAA CATGTGAAGT TCAGGCACAC AAAGGTGATA
AAGTCAAAGT ACACTATCGG GGAAAACTCA CTGATGGAAC TGTTTTCGAT TCTAGCTTCG AAAGAAAAAA TCCCATTGAA
TTCGAGCTTG GTGCTGGTCA AGTGATCAAA GGGTGGGACC AGGGATTATT GGGAATGTGT CTTGGTGAGA AGAGGAAGCT
GAAAATACCA TCAAGACTGG GCTATGGAGA TCAGGGTTCC CAACCCTCTA TTCCAGGTGG TGCAACACTG ATATTTGACA
CTGAGCTGGT GGGAGTGAAC GGTGTAAGTT TGGATGAAGA GGATAAGACG GGCTCTGAAC TGTAG

>Vigan.09G039400.01
MSFPSSMNAV TLLLFFLFVS VLVCAKKTGD VTELQIGVKH KPATCEVQAH KGDKVKVHYR GKLTDGTVFD SSFERKNPIE
FELGAGQVIK GWDQGLLGMC LGEKRKLKIP SRLGYGDQGS QPSIPGGATL IFDTELVGVN GVSLDEEDKT GSEL*