GBrowse Details

Vigan.09G045100.01

Basic Information:
Name: Vigan.09G045100.01
Multiple alignment
Variant Information
Position: Chr09:5924354..5932027 (+ strand)
Length: 7674
Functional Information:
Description: Similar to Uncharacterized protein. [I1MM97, Glycine max]
GO: Biological Process: isoprenoid biosynthetic process (GO:0008299)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: protein binding (GO:0005515)
Molecular Function: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity (GO:0030604)
Molecular Function: metal ion binding (GO:0046872)
Molecular Function: NADPH binding (GO:0070402)
InterPro: 1-deoxy-D-xylulose 5-phosphate reductoisomerase (IPR003821)
1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal (IPR013512)
1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal (IPR013644)
NAD(P)-binding domain (IPR016040)
DXP reductoisomerase C-terminal domain (IPR026877)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.53,0.54,17.84,1263.17,0.87,4.25,0.76,87.13
Arabidopsis thaliana homolog: AT5G62790.2
Automatic updates:
Name: NM_001354882 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR2), mRNA.
PubMed ID: 30786857 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr09:5924354..5924424 (+ strand)
Length: 71
Type: five_prime_UTR
Position: Chr09:5924425..5924500 (+ strand)
Length: 76
Type: CDS
Position: Chr09:5927162..5927349 (+ strand)
Length: 188
Type: CDS
Position: Chr09:5928837..5928923 (+ strand)
Length: 87
Type: CDS
Position: Chr09:5929158..5929283 (+ strand)
Length: 126
Type: CDS
Position: Chr09:5929360..5929422 (+ strand)
Length: 63
Type: CDS
Position: Chr09:5929562..5929711 (+ strand)
Length: 150
Type: CDS
Position: Chr09:5929860..5929927 (+ strand)
Length: 68
Type: CDS
Position: Chr09:5930077..5930188 (+ strand)
Length: 112
Type: CDS
Position: Chr09:5930301..5930405 (+ strand)
Length: 105
Type: CDS
Position: Chr09:5930641..5930762 (+ strand)
Length: 122
Type: CDS
Position: Chr09:5930998..5931144 (+ strand)
Length: 147
Type: CDS
Position: Chr09:5931560..5931713 (+ strand)
Length: 154
Type: CDS
Position: Chr09:5931714..5932027 (+ strand)
Length: 314
Type: three_prime_UTR


>Vigan.09G045100.01
GGACAACTAC TTTATAACGC TCTGATTGGT TCAATTTTTC ATTCGTGAAG ATTAGAGGTT GAAGTTCGGT AATGGCTCTG
AATTTGCCCT CTCCCGCACA AGTGAAGCCC TTCTTTTTCT CATCAAATAA CTACCCAAAA CTTCCAGGTA GTTTTTCTTT
GAAGAGAAAA GAGAGTGAGA CAACGGTAGA AAGAAGAGTT TATTGCTCTG TTGCAGTTCA ACCACTGCCA CCAGCTTGGC
CAGGAACAGC TATTCCAGAA CCTTCTGATT TTAAGACATG GGATGGTCCC AAACCCATTA CTGTCTTAGG ATCAACTGGT
TCAATTGGAA CTCAGACCCT GAGTATAGTG GCTGAGTTTC CAGAAAGATT TAAAGTAGTG TCACTTGCTG CTGGCTCAAA
TATTACTCTT CTTGCTGACC AGATAAAGAC GTTTAAGCCT CAAGTTGTTG GTCTTAGAAA TGAGTCCTTA GTGGATGAAC
TCAGAGAAGC TATTGCTGAC ATGGAACACA AACCTGAAAT CATCCCTGGA GAGCAAGGAG TCATTGAGGC TGCCCGTCAC
CCCGATGCAA CCACAGTAGT TACAGGAATA GTTGGTTGTG CAGGATTGAA GCCAACAGTT GCAGCAATTG AGGCAGGGAA
AGACATAGCT TTGGCCAACA AAGAGACAAT GATTGCTGGA GCCCCTTTTG TTCTTCCTCT TGCTCATAAG CACAACATCA
AAATTCTTCC AGCTGATTCT GAACATTCTG CAATTTTTCA GTCTATCCAG GGGTTGCCAA AGGGTGCACT TAGGAAAATC
CTTTTAACTG GATCAGGAGG TGCTTTCAGA GAATGGCCAG CTGAAAAGAT GAAAGACATT AAACTTGCTG ATGCACTAAA
GCATCCCATA TGGAGTTTGG GGAGAAAAAT AACTATTGAC TCTGCTACCC TTTTCAACAA GGGTCTAGAA GTAATTGAAG
CACATTACTT GTTTGGAGCA GACTACGATG ATATTGAGAT TGTTATTCAT CCACAATCTA TCATTCATTC CTTGGTTGAA
ACACAGGATT CATCTGTTAT TGCACAGTTG GGGATACCTG ACATGCGTTT ACCCCTCCTT TACACATTAT CTTGGCCAGA
GAGAATCTAC TGCTCTGAAA TAACTTGGCC TCGCCTTGAT CTTAGCAAGT ATGGTTCTTT AACATTTTAT GCACCTGATG
ATAAGAAGTT TCCATCTGTG AATCTATGTT ACGCTGCTGG ACGTGCTGGG GGCACAATGA CAGGAGTTCT CAGTGCAGCA
AATGAGAAAG CTGTAGAACT GTTTGTTGAA GAAAAGATTA GTTACTTGGA TATATTCAAG GTTGTGGAAC TAACATGCCA
GGAACATCAA AGAGAATTAG TAGCATCTCC TTCACTCGAA GAAATTATTC ACTATGATCA GTGGGCAAGA CAATATGCTG
CTGGTCTGAA AAAATTTTCA AGTGTTTGAA TCCCCCAATA TATTGCAAAA AGCTCTGGTG GATTGTTGCC AATGTAAATA
TATATATATA TATATATATA TATGATATTC ACTAACATCC TTCTTCAAAC TCATCATGCA TTAGAGTTTG TCATTGAAAA
ACATAAATAC TCAATATATA AATTTTGTAA ATGAATTAGC AATTTGCATA TCTAAAAATA TTAAAGGCAA TGTAATAATT
CCATCTTAAA AGGTGAGTGG ACTGATTTCA ATAACACTCT TGAAAGTGGT TAGTGGTTAG TGATCAGAGT CAGTATTCAA
CTTCAATAAA AGAATAAAGA AAA

>Vigan.09G045100.01
ATGGCTCTGA ATTTGCCCTC TCCCGCACAA GTGAAGCCCT TCTTTTTCTC ATCAAATAAC TACCCAAAAC TTCCAGGTAG
TTTTTCTTTG AAGAGAAAAG AGAGTGAGAC AACGGTAGAA AGAAGAGTTT ATTGCTCTGT TGCAGTTCAA CCACTGCCAC
CAGCTTGGCC AGGAACAGCT ATTCCAGAAC CTTCTGATTT TAAGACATGG GATGGTCCCA AACCCATTAC TGTCTTAGGA
TCAACTGGTT CAATTGGAAC TCAGACCCTG AGTATAGTGG CTGAGTTTCC AGAAAGATTT AAAGTAGTGT CACTTGCTGC
TGGCTCAAAT ATTACTCTTC TTGCTGACCA GATAAAGACG TTTAAGCCTC AAGTTGTTGG TCTTAGAAAT GAGTCCTTAG
TGGATGAACT CAGAGAAGCT ATTGCTGACA TGGAACACAA ACCTGAAATC ATCCCTGGAG AGCAAGGAGT CATTGAGGCT
GCCCGTCACC CCGATGCAAC CACAGTAGTT ACAGGAATAG TTGGTTGTGC AGGATTGAAG CCAACAGTTG CAGCAATTGA
GGCAGGGAAA GACATAGCTT TGGCCAACAA AGAGACAATG ATTGCTGGAG CCCCTTTTGT TCTTCCTCTT GCTCATAAGC
ACAACATCAA AATTCTTCCA GCTGATTCTG AACATTCTGC AATTTTTCAG TCTATCCAGG GGTTGCCAAA GGGTGCACTT
AGGAAAATCC TTTTAACTGG ATCAGGAGGT GCTTTCAGAG AATGGCCAGC TGAAAAGATG AAAGACATTA AACTTGCTGA
TGCACTAAAG CATCCCATAT GGAGTTTGGG GAGAAAAATA ACTATTGACT CTGCTACCCT TTTCAACAAG GGTCTAGAAG
TAATTGAAGC ACATTACTTG TTTGGAGCAG ACTACGATGA TATTGAGATT GTTATTCATC CACAATCTAT CATTCATTCC
TTGGTTGAAA CACAGGATTC ATCTGTTATT GCACAGTTGG GGATACCTGA CATGCGTTTA CCCCTCCTTT ACACATTATC
TTGGCCAGAG AGAATCTACT GCTCTGAAAT AACTTGGCCT CGCCTTGATC TTAGCAAGTA TGGTTCTTTA ACATTTTATG
CACCTGATGA TAAGAAGTTT CCATCTGTGA ATCTATGTTA CGCTGCTGGA CGTGCTGGGG GCACAATGAC AGGAGTTCTC
AGTGCAGCAA ATGAGAAAGC TGTAGAACTG TTTGTTGAAG AAAAGATTAG TTACTTGGAT ATATTCAAGG TTGTGGAACT
AACATGCCAG GAACATCAAA GAGAATTAGT AGCATCTCCT TCACTCGAAG AAATTATTCA CTATGATCAG TGGGCAAGAC
AATATGCTGC TGGTCTGAAA AAATTTTCAA GTGTTTGA

>Vigan.09G045100.01
MALNLPSPAQ VKPFFFSSNN YPKLPGSFSL KRKESETTVE RRVYCSVAVQ PLPPAWPGTA IPEPSDFKTW DGPKPITVLG
STGSIGTQTL SIVAEFPERF KVVSLAAGSN ITLLADQIKT FKPQVVGLRN ESLVDELREA IADMEHKPEI IPGEQGVIEA
ARHPDATTVV TGIVGCAGLK PTVAAIEAGK DIALANKETM IAGAPFVLPL AHKHNIKILP ADSEHSAIFQ SIQGLPKGAL
RKILLTGSGG AFREWPAEKM KDIKLADALK HPIWSLGRKI TIDSATLFNK GLEVIEAHYL FGADYDDIEI VIHPQSIIHS
LVETQDSSVI AQLGIPDMRL PLLYTLSWPE RIYCSEITWP RLDLSKYGSL TFYAPDDKKF PSVNLCYAAG RAGGTMTGVL
SAANEKAVEL FVEEKISYLD IFKVVELTCQ EHQRELVASP SLEEIIHYDQ WARQYAAGLK KFSSV*