VIGGS:GBrowse

Vigan.09G047000.01

Basic Information:

Name:	Vigan.09G047000.01 Multiple alignment Variant Information
Position:	Chr09:6211812..6214648 (+ strand)
Length:	2837

Functional Information:

Description:	Similar to cytochrome P450 82C2-like. [XP_003547786.2, Glycine max]
GO:	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: iron ion binding (GO:0005506)
	Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
	Molecular Function: heme binding (GO:0020037)
InterPro:	Cytochrome P450 (IPR001128)
	Cytochrome P450, E-class, group I (IPR002401)
	Cytochrome P450, conserved site (IPR017972)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.03,0.00,9.12,3.25,0.00,0.50,0.00,0.43

Automatic updates:

Name:	NM_001370644 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max cytochrome P450 82C4-like (LOC100791088), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:6211812..6211869 (+ strand)
Length:	58
Type:	five_prime_UTR

Position:	Chr09:6211870..6212823 (+ strand)
Length:	954
Type:	CDS

Position:	Chr09:6213815..6214444 (+ strand)
Length:	630
Type:	CDS

Position:	Chr09:6214445..6214648 (+ strand)
Length:	204
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.09G047000.01
AGAGAATTCA GATCCTATAA ATAAAGGTCC TTAGAGTGTG GCGACGCAAT CCTCAAAAAT GGATCCTGCT TCGAATTTCC
AAGCTTCTAT TGCAGGATTC TTAGTGTTGC TAATTGCATA CAAAGTGTTT AGGTTCATCA GATCTCCTAA ACAAAGAAAA
GGAACCAATG TTCCCGAACC TCACGGTGCT TTACCTCTGA TAGGGCACCT CCACCTTCTC AATGCTAGAA TACCCTATTT
CAGGACCTTC TCAGCCATGG CTGAGAAATA TGGTCCAGTC TTCTGTGTCA AACTGGGTTG CCACCCCACC ATAGTGGTGA
ACAACAGGGA AATTGCCAAA GAGTGCCTCA CCATAAATGA CAGAGTTTTT GCCTCAAGAC CAAACACTTC TGGTGGTCGA
CTCATGGGTT ACAACAATGC AATCTTTGGC ATTTCTCCTT ACGGAAATTA CTGGCGTGAG ATCAGAAAAA TGTCTGTTCT
CGAGATTTTG TCAAGCTACA GGCTTGAGAA GCTGAAGCAT GTGAGAGACA GTGAAACACT GTCTCTTGTG AAGGACTTGT
ACTCATCAAT GACAGTGTCC TCTGAAAAGC ACGCGAAGGA CTCAACTGAA GTGGCTATAA GCAATCTGTT AGAGCACATG
ACCTTCAACA TAATTGTGAG GATGATTGCT GGGAAGAGAT TTGGAGGGGA CACTTCCAAC GATGAAGATA ATGAAGCATG
GAAGCTGAGA AAAGCCATAA AAGATGCCAC ATATCTGTTT GGTGTTTTTG TGGTGGCTGA TGCGATTCCT TCTCTTGGTT
GGTTTGATTT CCAAGGTTAC GTGAGTTTCA TGAAAAGAAC AGCTCAACAA ACAGACCTTA TTCTTGAGAA GTGGCTGCAA
GAACATCTGA GAGAGAGAAT GCGAGATGGT GAATGTGAAA GGGACTTCAT GGACGTTATG ATATCAACGT TCGAAGAGCA
AGAAGATGTT TGTGGCTATA AGAAAGAGAC TGTTATCAAA GCAACAGCGA TGATGCTTAT CCTTACTGCT GGAGGAAGCA
CAGCCATGAC ACTAACATGG GCACTCTCCT TGCTCGTAAA CCATCCAAAG GTTCTAAAGG CAGCCCTACA AGAGTTGGAC
ACCCACGTAG GAAAAGAAAG ATGGGTCGAA GAATCTGACA TAAAAAACCT CAATTATCTC CATGCCATTA TCAAAGAGAC
CCTTCGTCTG TACCCGCCAG CACCCTTAAC AGGAATCAGG GAGGCGACGG AAGATTGCTC TTTGGCAGGG TACCATGTCC
CAAAGGGAAC ACGGTTGCTT GTTAATCTGT GGAACTTGCA AAGGGACCCA GAAGTATGGC CTAACCCTAA TGAGTTTCAG
CCAGAGAGGT TCCTCACCAC TCACAGAGAC ATTGATTTTA TGAGTCAGGA CTTTGAGTTG ATTCCATTTA GCTTTGGAAG
AAGGTCGTGC CCTGGCATGA CCTTTGGGCT GCAAGTGACG CACTTGACCT TGGCTTGCTT GCTTCAAGGC TTTCATATTT
TCACAAAGGA TGGTGGTCAC GTTGATATGA CTGAAGGGTT AGGAGTGGCT TTGCCTAAGG AACAAGAACT TCGACTTATT
CTGCAACCTC GTCTTCCATT GGAGCTTTAT GAAAGCCTTT GAATGATGCA TGTGAAAACT AGAACTATAT ATGTTTTAAT
TATTCTAAGT TATTGTTAGC TCCTAAATAA GATGTTTACT AGGCCTATGT GGAGCCCTAA TATGTCTACC TAGTGTAGGT
TTGTGTGTAT TGTTAGTAGT CCTTTTATTT TGTTTGTATT TTTCTTTTAA GAAACACAAT AAATTTTCTT TATTATAATA
TAAAAT

[show][hide][copy]CDS

>Vigan.09G047000.01
ATGGATCCTG CTTCGAATTT CCAAGCTTCT ATTGCAGGAT TCTTAGTGTT GCTAATTGCA TACAAAGTGT TTAGGTTCAT
CAGATCTCCT AAACAAAGAA AAGGAACCAA TGTTCCCGAA CCTCACGGTG CTTTACCTCT GATAGGGCAC CTCCACCTTC
TCAATGCTAG AATACCCTAT TTCAGGACCT TCTCAGCCAT GGCTGAGAAA TATGGTCCAG TCTTCTGTGT CAAACTGGGT
TGCCACCCCA CCATAGTGGT GAACAACAGG GAAATTGCCA AAGAGTGCCT CACCATAAAT GACAGAGTTT TTGCCTCAAG
ACCAAACACT TCTGGTGGTC GACTCATGGG TTACAACAAT GCAATCTTTG GCATTTCTCC TTACGGAAAT TACTGGCGTG
AGATCAGAAA AATGTCTGTT CTCGAGATTT TGTCAAGCTA CAGGCTTGAG AAGCTGAAGC ATGTGAGAGA CAGTGAAACA
CTGTCTCTTG TGAAGGACTT GTACTCATCA ATGACAGTGT CCTCTGAAAA GCACGCGAAG GACTCAACTG AAGTGGCTAT
AAGCAATCTG TTAGAGCACA TGACCTTCAA CATAATTGTG AGGATGATTG CTGGGAAGAG ATTTGGAGGG GACACTTCCA
ACGATGAAGA TAATGAAGCA TGGAAGCTGA GAAAAGCCAT AAAAGATGCC ACATATCTGT TTGGTGTTTT TGTGGTGGCT
GATGCGATTC CTTCTCTTGG TTGGTTTGAT TTCCAAGGTT ACGTGAGTTT CATGAAAAGA ACAGCTCAAC AAACAGACCT
TATTCTTGAG AAGTGGCTGC AAGAACATCT GAGAGAGAGA ATGCGAGATG GTGAATGTGA AAGGGACTTC ATGGACGTTA
TGATATCAAC GTTCGAAGAG CAAGAAGATG TTTGTGGCTA TAAGAAAGAG ACTGTTATCA AAGCAACAGC GATGATGCTT
ATCCTTACTG CTGGAGGAAG CACAGCCATG ACACTAACAT GGGCACTCTC CTTGCTCGTA AACCATCCAA AGGTTCTAAA
GGCAGCCCTA CAAGAGTTGG ACACCCACGT AGGAAAAGAA AGATGGGTCG AAGAATCTGA CATAAAAAAC CTCAATTATC
TCCATGCCAT TATCAAAGAG ACCCTTCGTC TGTACCCGCC AGCACCCTTA ACAGGAATCA GGGAGGCGAC GGAAGATTGC
TCTTTGGCAG GGTACCATGT CCCAAAGGGA ACACGGTTGC TTGTTAATCT GTGGAACTTG CAAAGGGACC CAGAAGTATG
GCCTAACCCT AATGAGTTTC AGCCAGAGAG GTTCCTCACC ACTCACAGAG ACATTGATTT TATGAGTCAG GACTTTGAGT
TGATTCCATT TAGCTTTGGA AGAAGGTCGT GCCCTGGCAT GACCTTTGGG CTGCAAGTGA CGCACTTGAC CTTGGCTTGC
TTGCTTCAAG GCTTTCATAT TTTCACAAAG GATGGTGGTC ACGTTGATAT GACTGAAGGG TTAGGAGTGG CTTTGCCTAA
GGAACAAGAA CTTCGACTTA TTCTGCAACC TCGTCTTCCA TTGGAGCTTT ATGAAAGCCT TTGA

[show][hide][copy]PROTEIN

>Vigan.09G047000.01
MDPASNFQAS IAGFLVLLIA YKVFRFIRSP KQRKGTNVPE PHGALPLIGH LHLLNARIPY FRTFSAMAEK YGPVFCVKLG
CHPTIVVNNR EIAKECLTIN DRVFASRPNT SGGRLMGYNN AIFGISPYGN YWREIRKMSV LEILSSYRLE KLKHVRDSET
LSLVKDLYSS MTVSSEKHAK DSTEVAISNL LEHMTFNIIV RMIAGKRFGG DTSNDEDNEA WKLRKAIKDA TYLFGVFVVA
DAIPSLGWFD FQGYVSFMKR TAQQTDLILE KWLQEHLRER MRDGECERDF MDVMISTFEE QEDVCGYKKE TVIKATAMML
ILTAGGSTAM TLTWALSLLV NHPKVLKAAL QELDTHVGKE RWVEESDIKN LNYLHAIIKE TLRLYPPAPL TGIREATEDC
SLAGYHVPKG TRLLVNLWNL QRDPEVWPNP NEFQPERFLT THRDIDFMSQ DFELIPFSFG RRSCPGMTFG LQVTHLTLAC
LLQGFHIFTK DGGHVDMTEG LGVALPKEQE LRLILQPRLP LELYESL*