VIGGS:GBrowse

Vigan.09G052900.01

Basic Information:

Name:	Vigan.09G052900.01 Multiple alignment Variant Information
Position:	Chr09:6959633..6962012 (+ strand)
Length:	2380

Functional Information:

Description:	Similar to Uncharacterized protein. [K7MG57, Glycine max]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:1.43,3.16,6.05,5.43,5.01,2.41,7.93,5.30

Automatic updates:

Name:	NM_001248071 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max Nup88 domain-containing protein (LOC100306691), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:6959633..6960409 (+ strand)
Length:	777
Type:	five_prime_UTR

Position:	Chr09:6960410..6960526 (+ strand)
Length:	117
Type:	CDS

Position:	Chr09:6960912..6961022 (+ strand)
Length:	111
Type:	CDS

Position:	Chr09:6961458..6961823 (+ strand)
Length:	366
Type:	CDS

Position:	Chr09:6961824..6962012 (+ strand)
Length:	189
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.09G052900.01
TTGACTCATC AGCTTCGAAC TTGAGACCCA TTTTTAGTTT CGTCTTCAAA GTTGTTTTTT TTTTGTTTGT GGACATGCGA
AATTCGTTAT TCGTTAGGCT CCCTATAGTT TGCTCGCTAT ACTGACATAC TTGGAGTTTT TTGGGGTTGG AGTTTGTGTT
TTTATTGTAT AGATTTGAAT TTTTCCGAGT ATTTTAGCTT GCAATTTTAA AATGTTTGTT TGATTTGCTA TGAAGGGATC
TATGGGTTGC AAGTTTTGTG TTTGGTCAAA TGCCTAAATG AGCTTTGAGA TTCCCTTTGG CTATCTTTAT TGGTTGTTTT
GTTAACTGTT GATTTCTTGT GGTCTGTTCT TTGTGAATGG CTCTGTTAAT AGTGCATGGC TTTGTTAATT TTGTTTGAAG
GGTTATTTCT TTTATGAGTC TTGATGGTAG ATTTGATACC TGGAGCTGTT GGGCCCTTTT ACTAGTTTTA ACGATATTGA
AAGCCATAGA AGAAAACAAT AATATTACTC TCCCTTTTTC CTTCTAAATC TCACTACCAA ACATACCTGC AGGGATAATA
GGGCTTCCTA CTGTAATCAT GACATTTATT GTGTGTTGTT TAGTGAGAAT TTAGCCGAGG TTTGATTCTA TTTGGAAGTT
GTATGGAACT TATCAATTAA TCCTTTCTAG AGTTATCAAC TTAATCAACA GTGAATGTGT ATTTTCCCTG GCATTTCTGA
GTTGGATTCC TGTATACAGA AATTTCCAAA ACAGATAGTT GTTGATGATT TGTCAACATG AATAAGTTGT TAGACTTTGG
GAGGAAAGCC CTCTTTTATG TCAGGGTGCT TTCTGGATAT GAAGAGCGAA GAATACGATC TTATAGGCTC CAGCTTGAAC
AACGCGTACA GCAGGCCCAA GCAAGGAAAG CAGCCATAAA TAAAGAACCT GAGAAGATTA TTTTATCTGA GGTTCGTCGA
ATGGTTGAAG AGATGCAAAA TTTGAACAAG AAGTTGGAAG AAACTGAGGC AGCCATTGAA GACTATTTCA AGCCTCTAGA
CAATGAAGCT GAGATTATAA TGAAAATGCA ACTACAAGGG GAGGAGAGAA CATCAGAGAT GATGATGAAG GCATTGGAGA
AACAAGCTTC TCTTCAGCAA GTTGAAGCAG AAAAAAATGC AATTATGCAT AAAGTTGACA ACTCTGAAGC CAACCTGGAT
GATTCTAAGC TGATGGAAGA AGAGAAAGGT TTGAAGGAGA TGTTGAAAGA ATTGCAACGA GAAGTTTTGC TTGAGAAAGC
TGATGCAGGA AGTTCTGATA ATATGCATCA ATCAGACAAG TCTCATATCA ATTTGGACCC TGCATCTTCA ACCACCTCTG
AAAGAAGCTG AGGTTATGTA ATTTTGAAGC ATTGGTGATT CCTGATTTTT GGCTTTGAAA TACATTTCAG CTGTGCTGCT
GAAATGTTAA TCATCTTGGT GAATTCAAAC TAACCAAGGC AGGACTAGGG CATATTTGTA GCTTGTTTGT ATTACTAATT
TTGTTCAATA AAATTTTCAT CTTTTGAGGC GTGATAAAAT

[show][hide][copy]CDS

>Vigan.09G052900.01
ATGAATAAGT TGTTAGACTT TGGGAGGAAA GCCCTCTTTT ATGTCAGGGT GCTTTCTGGA TATGAAGAGC GAAGAATACG
ATCTTATAGG CTCCAGCTTG AACAACGCGT ACAGCAGGCC CAAGCAAGGA AAGCAGCCAT AAATAAAGAA CCTGAGAAGA
TTATTTTATC TGAGGTTCGT CGAATGGTTG AAGAGATGCA AAATTTGAAC AAGAAGTTGG AAGAAACTGA GGCAGCCATT
GAAGACTATT TCAAGCCTCT AGACAATGAA GCTGAGATTA TAATGAAAAT GCAACTACAA GGGGAGGAGA GAACATCAGA
GATGATGATG AAGGCATTGG AGAAACAAGC TTCTCTTCAG CAAGTTGAAG CAGAAAAAAA TGCAATTATG CATAAAGTTG
ACAACTCTGA AGCCAACCTG GATGATTCTA AGCTGATGGA AGAAGAGAAA GGTTTGAAGG AGATGTTGAA AGAATTGCAA
CGAGAAGTTT TGCTTGAGAA AGCTGATGCA GGAAGTTCTG ATAATATGCA TCAATCAGAC AAGTCTCATA TCAATTTGGA
CCCTGCATCT TCAACCACCT CTGAAAGAAG CTGA

[show][hide][copy]PROTEIN

>Vigan.09G052900.01
MNKLLDFGRK ALFYVRVLSG YEERRIRSYR LQLEQRVQQA QARKAAINKE PEKIILSEVR RMVEEMQNLN KKLEETEAAI
EDYFKPLDNE AEIIMKMQLQ GEERTSEMMM KALEKQASLQ QVEAEKNAIM HKVDNSEANL DDSKLMEEEK GLKEMLKELQ
REVLLEKADA GSSDNMHQSD KSHINLDPAS STTSERS*