GBrowse Details

Vigan.09G053400.01

Basic Information:
Name: Vigan.09G053400.01
Multiple alignment
Variant Information
Position: Chr09:7066344..7074043 (+ strand)
Length: 7700
Functional Information:
Description: Similar to xylosyltransferase 2-like. [XP_004506594.1, Cicer arietinum]
GO: Cellular Component: membrane (GO:0016020)
Molecular Function: acetylglucosaminyltransferase activity (GO:0008375)
InterPro: Glycosyl transferase, family 14 (IPR003406)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.70,1.54,7.18,5.26,4.56,7.51,3.45,11.89
Arabidopsis thaliana homolog: AT2G37585.1
Automatic updates:
Name: NM_001255862 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max xylosyltransferase 2-like (LOC100813028), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:7066344..7066622 (+ strand)
Length: 279
Type: five_prime_UTR
Position: Chr09:7066623..7067187 (+ strand)
Length: 565
Type: CDS
Position: Chr09:7071585..7071660 (+ strand)
Length: 76
Type: CDS
Position: Chr09:7071745..7071860 (+ strand)
Length: 116
Type: CDS
Position: Chr09:7072817..7073331 (+ strand)
Length: 515
Type: CDS
Position: Chr09:7073332..7074043 (+ strand)
Length: 712
Type: three_prime_UTR


>Vigan.09G053400.01
TTTTAAAAAA AGTTGGATGT TCTTAAAATT TTGAAATAGA TTTATCCTTT AAAGATAGGT AATGACAATG TTTATACTTG
AGTTGGCAGA GACATAAGAA GGAAAAGCAG GGCAGAGACG GTACCAGCAG ATAGTAGGTC TCCCTCACAA TTTGACAGAA
AATCTTACAA CTGAATCCAC CCTACCCCAC CCAATTTCAA CCACCGTTGG AGCCGACAAA AAACACAACA AGAAGAAAGC
CAACAAACAA CAGGTAAGAA GTCTCGGACA CCCATAAACA TGAAACGAAA CCATAATTCC CACAACCACC ACCACTCCTT
CCGACCACGC AAATGGATGA CGATGATCAT CGCCATTGTA ACAATATGCA TTATCCTCCT GCTTCTTACC CTCACCAAAC
CTTCTTCTTC TTCTTCATCA CCATCTTCTT CCTCTTCTGC AACATGGTCT TCTTCTTCTT CTTCTTCGTT CAATTTAACG
GAAGAAGTAG GAGTGGGTCT TCCGAGATTG GCGTACATGT TGACGGGCAC TAAGGGGGAG GAAGCGCAGC TGAAGAGGGT
TCTTCAGGCT GTGTATCATC CCAGGAACTT CTACCTGCTT CATCTCGATC TAGAAGCTTC TGATGAGGAA AGGCTCGAGC
TTGCCAAGTA CGTCAAGTTT GAGACTGTGT TTGCGGCGTT TGGGAACGTC ATGGTCGTGG GTAAGTCTGA TTTGGTCACC
TACAAGGGCC CCACTATGGT TGCTTCCACT CTTCACGGCA TTGCTCTGTT GCTCAAGAGG ATTCCCCACT GGGACTGGTT
TCTCAATCTC AGTGCCTCTG ATTATCCTCT CATCTCCCAA GATGATCTCT TGCACATCTT TTCATTCTTG CCCAGGGATC
TAAATTTCAT TGAGCATACA AGTAATATTG GTTGGAAGGA ACATCAAAGA GCTAGACCAA TCATTATAGA TCCAGGCTTA
TATCATTTGA AGAAATCTGG TGTTTACTGG GCTAAAGAGA AGAGATCTGT TCCTTCATCA TTCAAATTAT TCACAGGTTC
TTCATGGATT GTGCTGACAA AGTCGTTTCT GGAGTTTTGT GTTTTGGGCT GGGATAATCT TCCTCGCACT CTCCTAATGT
ATTACACGAA TTTTCTTTCA TCCCCTGAGG GCTACTTCCA TACGGTCATT TGCAATCATA AGGACTATCA AAACACGACC
ATTAATCATG ATTTACGTTA TATAAGGTGG GACAATCCGC CAAAACAGCA TCCATTGTCC TTGAAGTTGG AGCATTTTGA
TGACATGGTA CGTAGTGGTA TTCCTTTTGC TCGGAAGTTT GCCAAGGATG ATCCAGTTCT TGACAAAATT GACAAGGAAC
TGCTGAGAAG ATCAAAGGGT CACTTTACAC CCGGAGGCTG GTGTTTTGGC AGTCCTCTTT TAGGAAAAGA CCCTTGCACA
GTTTATGGAA ATCCAATTGT AGTTAAACCT ACTTTGCGAT CGAAGAAGCT AGAAAAACTA ATGGTGAAAC TGTTAGATTC
TGAAAATTTT AGGCCGAAAC AGTGTAAATA GTCGTCACTG CAACTTGAAA TCTCTATTCA CGATTCTATT GGCGTTTTTA
TTGCATCTGT TCAAATTTAA CACTGAATTG CTGTGAAGCG TGCTTCTTTC TTGTGGTATA TGAACCTAAA CTAGGTCTTG
TCAATTCATG CCGTAAATGA ACCTTTGGTT TCAAGAGAAA CTTTTGGTAT TGCCAATTCA AAAATCACAC TTGAGTTCAG
GAATGTTCAA TCCAGAATGC ACTATGAGAT TCAAGAGTGC ATTCAAGATT ATTCAATTCG GAAATTACAT CGGGTTAGAC
AATCCAGAAT GTACTTTCAG ATTGGTATTG CATTTTGGGA GTGTTTTTGG TTTTTTTAAC GTTTGTTTGT TCTGTGTGTA
ACATAAGCGT GTGGGACATG ACATCGATGA CAACAACTTC TCTAGTCAAC GTTGTTGCAA CTGTGGTGGT GGGATTTTGT
TGGAAAAGAT GGTTGAGATC GGAAGGAGAA GATTGAAAGA TGATAGTGCT CAAAGATGAG AAAGGGGAAG ATGGAAGAGA
AAACAAGATT AGGATTTTTA ATGCATGAGG GTAAAAGTGA GATTTTAAAA GTCAGGAGCA GAAAGAAATG TTCTACACCT
ATTTTCTTTT GTGACACCGT CTAGATCTTT ACAGATTTTG TCTTAAGATA TCTCTCTTGT TGAATATTTG GGATTGGATG
TTAATAAAAT ATATTTTATA CAC

>Vigan.09G053400.01
ATGAAACGAA ACCATAATTC CCACAACCAC CACCACTCCT TCCGACCACG CAAATGGATG ACGATGATCA TCGCCATTGT
AACAATATGC ATTATCCTCC TGCTTCTTAC CCTCACCAAA CCTTCTTCTT CTTCTTCATC ACCATCTTCT TCCTCTTCTG
CAACATGGTC TTCTTCTTCT TCTTCTTCGT TCAATTTAAC GGAAGAAGTA GGAGTGGGTC TTCCGAGATT GGCGTACATG
TTGACGGGCA CTAAGGGGGA GGAAGCGCAG CTGAAGAGGG TTCTTCAGGC TGTGTATCAT CCCAGGAACT TCTACCTGCT
TCATCTCGAT CTAGAAGCTT CTGATGAGGA AAGGCTCGAG CTTGCCAAGT ACGTCAAGTT TGAGACTGTG TTTGCGGCGT
TTGGGAACGT CATGGTCGTG GGTAAGTCTG ATTTGGTCAC CTACAAGGGC CCCACTATGG TTGCTTCCAC TCTTCACGGC
ATTGCTCTGT TGCTCAAGAG GATTCCCCAC TGGGACTGGT TTCTCAATCT CAGTGCCTCT GATTATCCTC TCATCTCCCA
AGATGATCTC TTGCACATCT TTTCATTCTT GCCCAGGGAT CTAAATTTCA TTGAGCATAC AAGTAATATT GGTTGGAAGG
AACATCAAAG AGCTAGACCA ATCATTATAG ATCCAGGCTT ATATCATTTG AAGAAATCTG GTGTTTACTG GGCTAAAGAG
AAGAGATCTG TTCCTTCATC ATTCAAATTA TTCACAGGTT CTTCATGGAT TGTGCTGACA AAGTCGTTTC TGGAGTTTTG
TGTTTTGGGC TGGGATAATC TTCCTCGCAC TCTCCTAATG TATTACACGA ATTTTCTTTC ATCCCCTGAG GGCTACTTCC
ATACGGTCAT TTGCAATCAT AAGGACTATC AAAACACGAC CATTAATCAT GATTTACGTT ATATAAGGTG GGACAATCCG
CCAAAACAGC ATCCATTGTC CTTGAAGTTG GAGCATTTTG ATGACATGGT ACGTAGTGGT ATTCCTTTTG CTCGGAAGTT
TGCCAAGGAT GATCCAGTTC TTGACAAAAT TGACAAGGAA CTGCTGAGAA GATCAAAGGG TCACTTTACA CCCGGAGGCT
GGTGTTTTGG CAGTCCTCTT TTAGGAAAAG ACCCTTGCAC AGTTTATGGA AATCCAATTG TAGTTAAACC TACTTTGCGA
TCGAAGAAGC TAGAAAAACT AATGGTGAAA CTGTTAGATT CTGAAAATTT TAGGCCGAAA CAGTGTAAAT AG

>Vigan.09G053400.01
MKRNHNSHNH HHSFRPRKWM TMIIAIVTIC IILLLLTLTK PSSSSSSPSS SSSATWSSSS SSSFNLTEEV GVGLPRLAYM
LTGTKGEEAQ LKRVLQAVYH PRNFYLLHLD LEASDEERLE LAKYVKFETV FAAFGNVMVV GKSDLVTYKG PTMVASTLHG
IALLLKRIPH WDWFLNLSAS DYPLISQDDL LHIFSFLPRD LNFIEHTSNI GWKEHQRARP IIIDPGLYHL KKSGVYWAKE
KRSVPSSFKL FTGSSWIVLT KSFLEFCVLG WDNLPRTLLM YYTNFLSSPE GYFHTVICNH KDYQNTTINH DLRYIRWDNP
PKQHPLSLKL EHFDDMVRSG IPFARKFAKD DPVLDKIDKE LLRRSKGHFT PGGWCFGSPL LGKDPCTVYG NPIVVKPTLR
SKKLEKLMVK LLDSENFRPK QCK*