GBrowse Details

Vigan.09G054400.01

Basic Information:
Name: Vigan.09G054400.01
Multiple alignment
Variant Information
Position: Chr09:7346240..7359061 (+ strand)
Length: 12822
Functional Information:
Description: Similar to uracil phosphoribosyltransferase-like. [XP_004506634.1, Cicer arietinum]
GO: Biological Process: uracil salvage (GO:0006223)
Molecular Function: uracil phosphoribosyltransferase activity (GO:0004845)
InterPro: Uracil phosphoribosyl transferase (IPR005765)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:108.70,83.37,31.30,45.75,42.10,54.40,32.10,25.56
Arabidopsis thaliana homolog: AT3G53900.2
Automatic updates:
Name: NM_001255335 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uracil phosphoribosyltransferase-like (LOC100797537), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:7346240..7346388 (+ strand)
Length: 149
Type: five_prime_UTR
Position: Chr09:7346389..7346508 (+ strand)
Length: 120
Type: CDS
Position: Chr09:7346736..7346828 (+ strand)
Length: 93
Type: CDS
Position: Chr09:7347851..7347929 (+ strand)
Length: 79
Type: CDS
Position: Chr09:7348827..7348885 (+ strand)
Length: 59
Type: CDS
Position: Chr09:7353152..7353229 (+ strand)
Length: 78
Type: CDS
Position: Chr09:7353526..7353607 (+ strand)
Length: 82
Type: CDS
Position: Chr09:7353951..7353999 (+ strand)
Length: 49
Type: CDS
Position: Chr09:7354163..7354224 (+ strand)
Length: 62
Type: CDS
Position: Chr09:7357684..7357751 (+ strand)
Length: 68
Type: CDS
Position: Chr09:7358010..7358065 (+ strand)
Length: 56
Type: CDS
Position: Chr09:7358136..7358183 (+ strand)
Length: 48
Type: CDS
Position: Chr09:7358764..7358821 (+ strand)
Length: 58
Type: CDS
Position: Chr09:7358822..7359061 (+ strand)
Length: 240
Type: three_prime_UTR


>Vigan.09G054400.01
TGAAGTAGTA GTTTAAACAT GAAAAAGAAA TACGAGGTGG TTCTCTTGCA TCCATATCCA TGAAGATGTA TCTATCCGAC
CAACCATTAC TCTAGAAATT CCACATATCA TCTTCCCCAT AGGCCACAAC CCAGATTACA ACACACTTCA TGGCTTCTTC
CCGCGTTATC TTCAACCTTA CTCTCCCTTT TCCCTCCGAT GCGCCACCAA TTCCTTCCAC ATGTCACTCT CTTTCTCTCT
CACACTCCTT TCTCTTCACT ACCCCAAAGA TCTTTTGCTC CAGTGCTCCG CGGCGCACGT GTGGTGTGGT GTACTCTCAT
ATGACCATGG AGGAGAAGCT CCCTGCCGAG AACCGAATGC TCGTGTATGT GCCTCCTCAT CCGTTGATCA AGCACTGGGT
TTCAGTTTTG AGGAATGAGC AAACCCCTTG TCCTATCTTC AGAAATGCGC TGGCCGAGTT GGGAAGGCTA CTTATGTATG
AAGCTGCAAG GGATTGGTTG CCCACTGTTT CTGGAGAGAT TCAATCACCA TTGGCTGTAG CCTCTGTGGA ATTCATTGAT
CCAAGGGAGC CTCTGGCTAT AATTCCAATC TTGAGGGCAG GCCTTGCTCT TGCTGAACAT GCTTCATCAG TCTTGCCTGC
AACAAAAACA TACCATCTAG GAATAAGCAG AAACGAGGAA ACCCTTCAGC CGACTATATA TTTGAACAAG TTACCTGAGA
AATTTGCCGA TGGATGTAAA ATTTTTGTGG TTGATCCTAT GCTGGCAACA GGTGGTACTA TGGTGGCTGC TCTGAACCTC
TTAAAGGATC GAGGAGTTGA CAACAAGCAT ATTAAAGTGA TATCTGCTGT TGCGGCTCCT CCGGCTCTTC AAAAGCTAAG
TGAGCAGTTT CCTGGGCTTC ATGTCTATAC TGGAATAATT GATCCTGAAG TTAATGAAAA AGGGTTCATA ATTCCAGGCC
TTGGAGATGC AGGGGACCGG AGCTATGGTA CAGATCCATG AAATATTCAT CTTCATACTT CTTGGGTGCC ATATTTTTCA
ATTTTTGAGG CCTAAAATTG GTCACTAGTT TTTCGGATGG ATAGTAGGTT ACAATTTAAT GGCACTCTTT TGGTTACATA
GATGTGTCAT TATACTTCAA AGTTGAATAA TTTTTTCCTC TCACCACAAG CCACCAAACA CCACGTAAGC ACTTTCAGTT
AACAACCAAC ACAACATAAT CACCCTAAAA CCATAATCCC A

>Vigan.09G054400.01
ATGGCTTCTT CCCGCGTTAT CTTCAACCTT ACTCTCCCTT TTCCCTCCGA TGCGCCACCA ATTCCTTCCA CATGTCACTC
TCTTTCTCTC TCACACTCCT TTCTCTTCAC TACCCCAAAG ATCTTTTGCT CCAGTGCTCC GCGGCGCACG TGTGGTGTGG
TGTACTCTCA TATGACCATG GAGGAGAAGC TCCCTGCCGA GAACCGAATG CTCGTGTATG TGCCTCCTCA TCCGTTGATC
AAGCACTGGG TTTCAGTTTT GAGGAATGAG CAAACCCCTT GTCCTATCTT CAGAAATGCG CTGGCCGAGT TGGGAAGGCT
ACTTATGTAT GAAGCTGCAA GGGATTGGTT GCCCACTGTT TCTGGAGAGA TTCAATCACC ATTGGCTGTA GCCTCTGTGG
AATTCATTGA TCCAAGGGAG CCTCTGGCTA TAATTCCAAT CTTGAGGGCA GGCCTTGCTC TTGCTGAACA TGCTTCATCA
GTCTTGCCTG CAACAAAAAC ATACCATCTA GGAATAAGCA GAAACGAGGA AACCCTTCAG CCGACTATAT ATTTGAACAA
GTTACCTGAG AAATTTGCCG ATGGATGTAA AATTTTTGTG GTTGATCCTA TGCTGGCAAC AGGTGGTACT ATGGTGGCTG
CTCTGAACCT CTTAAAGGAT CGAGGAGTTG ACAACAAGCA TATTAAAGTG ATATCTGCTG TTGCGGCTCC TCCGGCTCTT
CAAAAGCTAA GTGAGCAGTT TCCTGGGCTT CATGTCTATA CTGGAATAAT TGATCCTGAA GTTAATGAAA AAGGGTTCAT
AATTCCAGGC CTTGGAGATG CAGGGGACCG GAGCTATGGT ACAGATCCAT GA

>Vigan.09G054400.01
MASSRVIFNL TLPFPSDAPP IPSTCHSLSL SHSFLFTTPK IFCSSAPRRT CGVVYSHMTM EEKLPAENRM LVYVPPHPLI
KHWVSVLRNE QTPCPIFRNA LAELGRLLMY EAARDWLPTV SGEIQSPLAV ASVEFIDPRE PLAIIPILRA GLALAEHASS
VLPATKTYHL GISRNEETLQ PTIYLNKLPE KFADGCKIFV VDPMLATGGT MVAALNLLKD RGVDNKHIKV ISAVAAPPAL
QKLSEQFPGL HVYTGIIDPE VNEKGFIIPG LGDAGDRSYG TDP*