GBrowse Details

Vigan.09G054800.01

Basic Information:
Name: Vigan.09G054800.01
Multiple alignment
Variant Information
Position: Chr09:7427961..7446016 (+ strand)
Length: 18056
Functional Information:
Description: Similar to UPF0160 protein MYG1, mitochondrial isoform X1. [XP_003520911.1, Glycine max]
InterPro: Metal-dependent protein hydrolase (IPR003226)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.25,5.89,7.75,7.20,11.42,9.94,4.86,7.07
Automatic updates:
Name: NM_001365107 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max UPF0160 protein MYG1, mitochondrial-like (LOC100795829), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:7427961..7428180 (+ strand)
Length: 220
Type: five_prime_UTR
Position: Chr09:7428181..7428423 (+ strand)
Length: 243
Type: CDS
Position: Chr09:7429232..7429378 (+ strand)
Length: 147
Type: CDS
Position: Chr09:7429545..7429643 (+ strand)
Length: 99
Type: CDS
Position: Chr09:7430873..7431064 (+ strand)
Length: 192
Type: CDS
Position: Chr09:7431182..7431301 (+ strand)
Length: 120
Type: CDS
Position: Chr09:7435305..7435376 (+ strand)
Length: 72
Type: CDS
Position: Chr09:7435697..7435726 (+ strand)
Length: 30
Type: CDS
Position: Chr09:7435727..7436038 (+ strand)
Length: 312
Type: three_prime_UTR
Position: Chr09:7445421..7446016 (+ strand)
Length: 596
Type: three_prime_UTR


>Vigan.09G054800.01
AAATCGCATG TTGTTAGTAT CTAATGTAGT AAATTGCACC CCACAAAATT GGAATAGAAT AAAAAAAAGA AAAAGAAAAC
TTAATATAAT TTGGTAAAGA AAATGAAGTC TAAAAAGAAT TTGTAAAGAC ATTGGTTAAA CCCTACAGAA TGCAGAAAAC
AGGGTTTTGT ATAAGAATGG AAGAAAAATG AGTGTTGGAA GAAAGTGAAG AAAAACTGGC ATGTGGGCTG TGACGGCAAA
ACCATTTATC AAATCCCATT TTCTCAAACA CACCCTTCCA CTTCTTCTCA TGGCAAACCA AACATCACTC TCCTTCTCTT
CTGGCTCTCC CGTTCACGCG CCTCTGAAGC GCGTGGGCAC TCACAATGGA AGTTTTCACT GCGACGAGGC CCTTGGCTGC
TTCATGATTC GCCTCACTCA CAAATTTAAC AACGCCGAAA TCGTTCGCAC CCGAGACCCT CAGGTTTTGG AGGGTCTTGA
TGCTGTTCTT GATGTTGGGG GAGTCTATGA CCCTGCCCGA GATCGGTATG ATCATCATCA GAAGGGTTTT GAAGAAGTTT
TTGGGCATGG TTTCTCCACT AAATTGAGCA GTGCTGGTCT TGTTTATAAG CATTTTGGAA AGGAGATTAT AGCAAAAGAA
CTGAAGGTAG ATGACGTACA GCAAGACGTC CATCATATAT ATTTGGCGGT TTACAAGAGC TTCATGGAGG CAATTGATGC
TATAGACAAT GGAATTAATC GATATGATAC AGACCTGCCT CCGAAATATT TGAATAATAC TCATTTATCC TCAAGAGTAG
GAAGATTAAA TTTGGACTGG ACAGATCCTG ATCAGTCAGC TGAGAAAGAA AATGAGGCCT TTCAACGTGC CATGGCTCTT
GCTGGCAGTG AATTTCTGGA TAGCGTTCGT TTTCATGTAA AGTCATGGTT ACCAGCAAGG TCAATTGTAA TGGAGAACAT
AGCAGCTAGA CAGACTGTTG ATCCTAGTGG AGAAATTCTA GTTTTGACTA AATTTTGTCC TTGGAAGCTT CACTTATTTG
AGCTTGAAGG GGAGTTGAAA ATTGACCCTC CAATCAAATA TGTTCTATAT CAGGGTTGCC TGAAGTGCAC CCGTTTCCTT
TAATTATCAG GGTTGCCCAA GGTGCATCCA ACTTTGTGCC ACTGCCACAC CATCTTTATC ACTGTTGTTG CTGTCATTTT
TGTTGCCACC GTTGTTGTTG CCATAGCTTG AATTAGATCA ACAATCACTC TAGGAAATTT GTCATCCTTT AATTTGTCAA
CCATTGAACT TGCACTGCTA TCGGAGTATC CATGTGCCTG TATGCTCCTC TTTTTTCTCT ATGATTGGGC TTCATGTGAC
ACAAGTTTCG GACTTGTGAT TGTGCATTCG ATGTGTTTTT CTCAGCGCAG CTTGCTTTGT CGAAGTTACC CTAAGGAAGA
TAATGGTGGA AGAGAGAGAA AAATGTGGAG GCAGTTAACG GTGAGAGAAA TAGAGAAGAG AGAGAAAAAA TGTCAGGAAA
AGCAGAGGAG AGAGAAGAAA AGTGTAGTCA GGTAAGTGTG AATTTAACAC CGTTCCTACC TATTTAACGG AAGGGACCGA
ATTCTTACAA AATTCGTAAT ATGGGAACAA AATAGCTTCA TTTTTAAAAC CGGGTACAAA ACAGAAATTC AGTCCCTAAC
TTGGGGACGA AATAAGCATT TAAGCCTTAA ATATAATACT AAACTTGAGA TGAGATAAAG GATAGAGAAG GCATACACAT
ATTATCCCAT GTACGTGTCC AGTATTGAAT TAAATGACGA GTGGATAATC AAAAAGGGAA AGTCCTTGCT TAGTTATGCA
TGCTTCATGG ATGAATGTAC ATACGTGTTT TGATGTTGAT GAGGGAGCTA GAAGGAAATG CGGTCCAAGA AACTTGAATG
CCAAGTTCAA CATGTAGGGA AAATCCACAA TAGATGAGGA TAAAGACGTT GTTGAGGAAA GGGAAGAACT TTTGATCAAT
GAGGAGGATG TTTTATAGGA GTTTTTGTAG G

>Vigan.09G054800.01
ATGTGGGCTG TGACGGCAAA ACCATTTATC AAATCCCATT TTCTCAAACA CACCCTTCCA CTTCTTCTCA TGGCAAACCA
AACATCACTC TCCTTCTCTT CTGGCTCTCC CGTTCACGCG CCTCTGAAGC GCGTGGGCAC TCACAATGGA AGTTTTCACT
GCGACGAGGC CCTTGGCTGC TTCATGATTC GCCTCACTCA CAAATTTAAC AACGCCGAAA TCGTTCGCAC CCGAGACCCT
CAGGTTTTGG AGGGTCTTGA TGCTGTTCTT GATGTTGGGG GAGTCTATGA CCCTGCCCGA GATCGGTATG ATCATCATCA
GAAGGGTTTT GAAGAAGTTT TTGGGCATGG TTTCTCCACT AAATTGAGCA GTGCTGGTCT TGTTTATAAG CATTTTGGAA
AGGAGATTAT AGCAAAAGAA CTGAAGGTAG ATGACGTACA GCAAGACGTC CATCATATAT ATTTGGCGGT TTACAAGAGC
TTCATGGAGG CAATTGATGC TATAGACAAT GGAATTAATC GATATGATAC AGACCTGCCT CCGAAATATT TGAATAATAC
TCATTTATCC TCAAGAGTAG GAAGATTAAA TTTGGACTGG ACAGATCCTG ATCAGTCAGC TGAGAAAGAA AATGAGGCCT
TTCAACGTGC CATGGCTCTT GCTGGCAGTG AATTTCTGGA TAGCGTTCGT TTTCATGTAA AGTCATGGTT ACCAGCAAGG
TCAATTGTAA TGGAGAACAT AGCAGCTAGA CAGACTGTTG ATCCTAGTGG AGAAATTCTA GTTTTGACTA AATTTTGTCC
TTGGAAGCTT CACTTATTTG AGCTTGAAGG GGAGTTGAAA ATTGACCCTC CAATCAAATA TGTTCTATAT CAGGGTTGCC
TGAAGTGCAC CCGTTTCCTT TAA

>Vigan.09G054800.01
MWAVTAKPFI KSHFLKHTLP LLLMANQTSL SFSSGSPVHA PLKRVGTHNG SFHCDEALGC FMIRLTHKFN NAEIVRTRDP
QVLEGLDAVL DVGGVYDPAR DRYDHHQKGF EEVFGHGFST KLSSAGLVYK HFGKEIIAKE LKVDDVQQDV HHIYLAVYKS
FMEAIDAIDN GINRYDTDLP PKYLNNTHLS SRVGRLNLDW TDPDQSAEKE NEAFQRAMAL AGSEFLDSVR FHVKSWLPAR
SIVMENIAAR QTVDPSGEIL VLTKFCPWKL HLFELEGELK IDPPIKYVLY QGCLKCTRFL *