GBrowse Details

Vigan.09G055800.01

Basic Information:
Name: Vigan.09G055800.01
Multiple alignment
Variant Information
Position: Chr09:7598265..7601962 (+ strand)
Length: 3698
Functional Information:
Description: Similar to Ribulose bisphosphate carboxylase/oxygenase activase 1. [U5U2P4, Phaseolus vulgaris]
GO: Molecular Function: ATP binding (GO:0005524)
InterPro: ATPase, AAA-type, core (IPR003959)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.10,47.18,2.65,13.40,48.22,0.92,2.87,16.24
Arabidopsis thaliana homolog: AT2G39730.1
Automatic updates:
Name: NM_001289312 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like (RCA03), mRNA.
PubMed ID: 20032079 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr09:7598265..7598507 (+ strand)
Length: 243
Type: five_prime_UTR
Position: Chr09:7598508..7598552 (+ strand)
Length: 45
Type: CDS
Position: Chr09:7598937..7599253 (+ strand)
Length: 317
Type: CDS
Position: Chr09:7599361..7599552 (+ strand)
Length: 192
Type: CDS
Position: Chr09:7600123..7600595 (+ strand)
Length: 473
Type: CDS
Position: Chr09:7601114..7601395 (+ strand)
Length: 282
Type: CDS
Position: Chr09:7601525..7601640 (+ strand)
Length: 116
Type: CDS
Position: Chr09:7601641..7601962 (+ strand)
Length: 322
Type: three_prime_UTR


>Vigan.09G055800.01
CTGCACTCAA AAACGACGTT CCAAACCCAA TGTCCATGTC ACCAAAAGCC ACGTATTAAT AATACCGCAG TACTTCCAAC
CCCACTTCTG TGGCTTTTGA TAAATTCTTT AGTCAATCCA CAGATTTTCC TTTCACTTTT TCCACACTAT AAAACACCGT
CTCACCTATT CAATCCAACC AAACACCTTG AAACACTTAG TTTTCTGTTG TCTTGTTCCC CTTTAACACT CCTACTAGTC
AAAATGGCTG CCTCAATGCC AACCTTTGGA GCTGTTAACA TGGCACCGTT GAAACTGAAT GGCTATAGCA GTGGAGTGAC
AGGCTCTGCA TTCTTTGGAA TCTGTTTGAA GAAAACCAGT TCTGTGAGAT CTAGCCAGAA GAGTGTGTGT GGGAATTTCA
AAGTTTCTGC AGAGATTGAA TATGATGAGG AGAAGCAGAC TTCAAAGGAT AGATGGGGAG GACTTGCTTA TGACACTTCC
GATGACCAGC AGGATATCAC TAGAGGGAAG GGAATGGTGG ACACTCTCTT CCAAGCTCCC ATGGAGAGTG GCACTCACTA
TGCTGTCATG AGTTCCTATG ATTACATCAG TGCTGGTCTT CGCCAGTACA ATTTGGACAA CACCATGGAT GGCTTCTATA
TTGCTCCTGC ATTTATGGAT AAGATTGTTG TTCACATCAC CAAGAACTTT TTGTCCTTGC CAAATATTAA GGTTCCTCTT
ATTTTGGGTA TTTGGGGAGG CAAAGGTCAG GGGAAATCAT TCCAATGTGA GCTTGTCTTT GCCAAGATGG GAATCAACCC
CATAATGATG AGTGCTGGAG AATTGGAGAG TGGAAATGCT GGAGAGCCTG CTAAGTTGAT CAGGCAAAGG TACCGTGAGG
CAGCAGACAT TATCAGAAAA GGAAAGATGT GCTGTCTCTT TATCAATGAT CTTGATGCTG GAGCTGGTAG GCTTGGTGGA
ACAACTCAGT ACACTGTGAA CAACCAGATG GTGAATGCAA CCCTCATGAA CATTGCTGAC AACCCAACCA ATGTCCAACT
TCCTGGCATG TACAACAAGG AGGAGAATCC CCGTGTTCCA ATCATAGTCA CTGGCAATGA CTTCTCAACA TTGTATGCTC
CTCTCATTCG TGATGGTCGT ATGGAGAAGT TCTATTGGGC ACCTACTCGA GATGACAGGA TTGGTGTCTG CCAAGGCATT
TTCAGAACAG ATGGTATCCC AAAAGAGGAC ATCATCAAGC TTGTTGACAC TTTCCCTGGC CAATCTATTG ACTTCTTTGG
TGCCTTGAGG GCCAGAGTGT ATGATGATGA AGTGAGAAAG TGGATTTCTG GGGTGGGAGT GGAGAATGTT GGGAAAAAGT
TAGTGAATTC AAAGGAGGGA CCACCAACTT TTAAGCAACC ACAGATGTCT CTTAGCAAGC TCCTTGAGTA TGGAAACATG
CTTGTCCAAG AGCAAGAGAA TGTGAAGAGA GTTCAACTGG CTGACAAATA CCTCAAAGAG GCTGCACTTG GAGATGCAAA
TGAAGATGCC ATGAAGACAG GAAACTTCTA TGGACAAGCA GCTCAGCAAG TTCATGTTCC TGTTCCTGAA GGTTGCACTG
ACCCTGCTGC AGAAAACTAT GATCCAACAG CCAGAAGTGA TGATGGAAGC TGCACATATA CACTTTAGGT GATGATTCTT
AGGTAAATTT GGAGCAGATA CGGAGATATA TGGTACAGAA GAATAAAGAA TGTTATCATG TTTTTCACAT TTGCATTCAC
TTCTTTTATG TATGTTGTAG ATATTTGAAA CCTTCTGTGT TTGGTTTTAT GGGTGGCAAT GAGACATCTT ATAGCTATCA
TAGTTGAAAA CGTCCTTTTC TTTGGGTTTC ACTGTTATAT TGCCAAGTTT GTAAATCAAA ACTTTAGTTG TACTAATAAT
GTGTATGATA GAATACTAAA AGAAAATTAT GTGTAACATT AAAGTTATCA CAATAGATAA TACTAATAAG 

>Vigan.09G055800.01
ATGGCTGCCT CAATGCCAAC CTTTGGAGCT GTTAACATGG CACCGTTGAA ACTGAATGGC TATAGCAGTG GAGTGACAGG
CTCTGCATTC TTTGGAATCT GTTTGAAGAA AACCAGTTCT GTGAGATCTA GCCAGAAGAG TGTGTGTGGG AATTTCAAAG
TTTCTGCAGA GATTGAATAT GATGAGGAGA AGCAGACTTC AAAGGATAGA TGGGGAGGAC TTGCTTATGA CACTTCCGAT
GACCAGCAGG ATATCACTAG AGGGAAGGGA ATGGTGGACA CTCTCTTCCA AGCTCCCATG GAGAGTGGCA CTCACTATGC
TGTCATGAGT TCCTATGATT ACATCAGTGC TGGTCTTCGC CAGTACAATT TGGACAACAC CATGGATGGC TTCTATATTG
CTCCTGCATT TATGGATAAG ATTGTTGTTC ACATCACCAA GAACTTTTTG TCCTTGCCAA ATATTAAGGT TCCTCTTATT
TTGGGTATTT GGGGAGGCAA AGGTCAGGGG AAATCATTCC AATGTGAGCT TGTCTTTGCC AAGATGGGAA TCAACCCCAT
AATGATGAGT GCTGGAGAAT TGGAGAGTGG AAATGCTGGA GAGCCTGCTA AGTTGATCAG GCAAAGGTAC CGTGAGGCAG
CAGACATTAT CAGAAAAGGA AAGATGTGCT GTCTCTTTAT CAATGATCTT GATGCTGGAG CTGGTAGGCT TGGTGGAACA
ACTCAGTACA CTGTGAACAA CCAGATGGTG AATGCAACCC TCATGAACAT TGCTGACAAC CCAACCAATG TCCAACTTCC
TGGCATGTAC AACAAGGAGG AGAATCCCCG TGTTCCAATC ATAGTCACTG GCAATGACTT CTCAACATTG TATGCTCCTC
TCATTCGTGA TGGTCGTATG GAGAAGTTCT ATTGGGCACC TACTCGAGAT GACAGGATTG GTGTCTGCCA AGGCATTTTC
AGAACAGATG GTATCCCAAA AGAGGACATC ATCAAGCTTG TTGACACTTT CCCTGGCCAA TCTATTGACT TCTTTGGTGC
CTTGAGGGCC AGAGTGTATG ATGATGAAGT GAGAAAGTGG ATTTCTGGGG TGGGAGTGGA GAATGTTGGG AAAAAGTTAG
TGAATTCAAA GGAGGGACCA CCAACTTTTA AGCAACCACA GATGTCTCTT AGCAAGCTCC TTGAGTATGG AAACATGCTT
GTCCAAGAGC AAGAGAATGT GAAGAGAGTT CAACTGGCTG ACAAATACCT CAAAGAGGCT GCACTTGGAG ATGCAAATGA
AGATGCCATG AAGACAGGAA ACTTCTATGG ACAAGCAGCT CAGCAAGTTC ATGTTCCTGT TCCTGAAGGT TGCACTGACC
CTGCTGCAGA AAACTATGAT CCAACAGCCA GAAGTGATGA TGGAAGCTGC ACATATACAC TTTAG

>Vigan.09G055800.01
MAASMPTFGA VNMAPLKLNG YSSGVTGSAF FGICLKKTSS VRSSQKSVCG NFKVSAEIEY DEEKQTSKDR WGGLAYDTSD
DQQDITRGKG MVDTLFQAPM ESGTHYAVMS SYDYISAGLR QYNLDNTMDG FYIAPAFMDK IVVHITKNFL SLPNIKVPLI
LGIWGGKGQG KSFQCELVFA KMGINPIMMS AGELESGNAG EPAKLIRQRY REAADIIRKG KMCCLFINDL DAGAGRLGGT
TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENPRVPI IVTGNDFSTL YAPLIRDGRM EKFYWAPTRD DRIGVCQGIF
RTDGIPKEDI IKLVDTFPGQ SIDFFGALRA RVYDDEVRKW ISGVGVENVG KKLVNSKEGP PTFKQPQMSL SKLLEYGNML
VQEQENVKRV QLADKYLKEA ALGDANEDAM KTGNFYGQAA QQVHVPVPEG CTDPAAENYD PTARSDDGSC TYTL*