GBrowse Details

Vigan.09G059600.01

Basic Information:
Name: Vigan.09G059600.01
Multiple alignment
Variant Information
Position: Chr09:8050220..8053425 (+ strand)
Length: 3206
Functional Information:
Description: Similar to Alpha-amylase. [Q7X9T1, Phaseolus angularis]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: alpha-amylase activity (GO:0004556)
Molecular Function: calcium ion binding (GO:0005509)
Molecular Function: cation binding (GO:0043169)
InterPro: Alpha amylase (IPR006046)
Glycosyl hydrolase, family 13, catalytic domain (IPR006047)
Glycosyl hydrolase, family 13, subfamily, catalytic domain (IPR006589)
Alpha-amylase, C-terminal beta-sheet (IPR012850)
Alpha-amylase, plant (IPR013775)
Glycosyl hydrolase, family 13, all-beta (IPR013780)
Glycoside hydrolase, catalytic domain (IPR013781)
Glycoside hydrolase, family 13 (IPR015902)
Glycoside hydrolase, superfamily (IPR017853)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.80,0.18,38.63,4.94,24.64,43.98,23.35,9.68
Arabidopsis thaliana homolog: AT4G25000.1
Automatic updates:
Name: NM_001329839 NCBI(nuccore)
Organism: Vigna angularis
Description: Vigna angularis alpha-amylase (LOC108346293), mRNA.
PubMed ID: 12834286 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr09:8050220..8050749 (+ strand)
Length: 530
Type: five_prime_UTR
Position: Chr09:8050750..8050833 (+ strand)
Length: 84
Type: CDS
Position: Chr09:8051077..8051206 (+ strand)
Length: 130
Type: CDS
Position: Chr09:8051644..8052449 (+ strand)
Length: 806
Type: CDS
Position: Chr09:8052919..8053164 (+ strand)
Length: 246
Type: CDS
Position: Chr09:8053165..8053425 (+ strand)
Length: 261
Type: three_prime_UTR


>Vigan.09G059600.01
CTTATTCCAA AAAATTGAAA ACACAGCCAC TACTTCAGTG GGAACATGAT GAACTACGTC AACATCTCCC TAATAGTTTT
CAAGCACGCT ACACAGCCTT TTCCTTCTTA AAAACAATAG AATTTCTCAT CCTTTTCACT AAAACTTCCA AAACTGGTGT
CTGAGATGTA TTTTTCTGTT CATGTTTTCC AAATATGTTA TCATACATGT ATAATTTATG AAGTCTCCAT ACCTTTAGGC
CTTATCTCTA ATTACTCCAA AAGTTTCTAT TCCAAATTCA CACTATCCTT GATTTCTCTC TTGTTTCTGA ACTTCCTCAG
TCATCTCCAT TTCAATGATT ATCACTTTGT TTTGGATGCT GTATCTTATC TTGATGACGT AAATTTCACC CTTTCAAGTC
TTAATTTGCC TAACTCAAGA CTCAACCATG ATTTTAAGAC ACGCAAAAAA GGTAATTTGT TCCTCTATAT AAGCCACAGC
AAGCAAGCAG CAGAAACACT CAAACACAAC GCCAAAACAA AATCAAAGCT ATGGATTCCT TCTCTCGGCT CAGCATTTTT
TGTCTCTTCA TTTCACTCCT TCCTCTTTTC TCTTCCCCTG CCTTGCTGTT TCAGGGGTTC AACTGGGAAT CAAGTAAGAA
AGGGGGGTGG TACAACTCTC TTAAGAACTC TATTCCTGAC CTTGCAAATG CGGGAATCAC TCATGTGTGG CTCCCTCCTC
CCTCTCAATC TGTTTCTCCT GAAGGATATC TTCCAGGAAG GCTATATGAT CTTGATGCAT CAAGATATGG ATCCAAGAAT
GAACTGAAGT CCCTGATTGC TGCTTTTCAT GAGAAGGGGA TAAAGTGCCT AGCTGACATA GTGATCAACC ACAGAACTGC
AGAGAGGAAG GATGGGAGAG GAATATATTG TATCTTTGAA GGTGGTACTC CAGATTCACG CCTTGATTGG GGTCCATCTT
TCATTTGCAG AGATGACACT GCTTATTCTG ATGGTACTGG AAACAATGAC AGTGGAGAGG GCTATGATGC TGCACCTGAC
ATTGATCATC TCAATCCACA GGTGCAAAGA GAGTTGTCAG AATGGATGAA CTGGCTCAAA ACTGAGATTG GTTTTGATGG
ATGGAGGTTT GATTTTGTGA AGGGCTATGC CCCTAGCATC TCCAAGATCT ATATGGAACA GACTAGGCCA GCTTTTGCAG
TAGGTGAGAA ATGGGATTCT CTCTCATCTG GCCAGGATGG GAAGCCAAAC TATAACCAAG ATAGTCACCG TGGGGCACTG
GTGAATTGGG TTGAATCTGC AGGTGGAGCT ATTACTGCAT TTGATTTCAC AACAAAAGGA ATTCTTCAGG CTGCTGTGCA
AGGAGAATTG TGGAGGTTGA TAGATCCAAA TGGCAAGCCT CCTGGAATGA TTGGTGTGAA ACCAGAAAAT GCAGTAACTT
TCATTGACAA CCATGACACT GGTTCCACAC AGAGACTTTG GCCATTCCCT TCTGACAAAG TCATGCAAGG ATATGCCTAC
ATTCTAACAC ACCCTGGCAC CCCCTCAATA TTCTACGACC ACTTCTTTGA TTGGGGCTTG AAGGAGCAGA TTGCCAAATT
GAGTAGCATA AGGGTGAGGA ATGGGATCAA TGAGAAAAGC ACTGTTAAAA TTATGGCATC TGAAGGTGAC CTTTATGTTG
CAAAGATAGA CAACAAGATC ATGGTGAAGA TAGGGCCAAA GATGGACCTT GGAAATCTTA TTCCTTCAAA TCTCCATGTT
GCTACCTCTG GCCAAGACTA TGCCGTGTGG GAGTGAATAA TTTATTACAG TATACAATAA GGAACACTAT CATAAACTAC
CTTGTCATTG GGTATAAGAT CATTTTATGA AATGTTTAAT TCACCCCTTT ACCCAATGCA ATTTCCCTTA ATATTTATAA
ACCATAATTC CAAGATCACA AATCATTATG CAAAATTTTC ATCTATTACT TGTGTGAGAA ATTGGATGAA AAGATGGTTT
TCTTATTGCT AAATCGGTTT CTCCTCAAGA GTTATTAATA ATGGTTTATT ATAAAAT

>Vigan.09G059600.01
ATGGATTCCT TCTCTCGGCT CAGCATTTTT TGTCTCTTCA TTTCACTCCT TCCTCTTTTC TCTTCCCCTG CCTTGCTGTT
TCAGGGGTTC AACTGGGAAT CAAGTAAGAA AGGGGGGTGG TACAACTCTC TTAAGAACTC TATTCCTGAC CTTGCAAATG
CGGGAATCAC TCATGTGTGG CTCCCTCCTC CCTCTCAATC TGTTTCTCCT GAAGGATATC TTCCAGGAAG GCTATATGAT
CTTGATGCAT CAAGATATGG ATCCAAGAAT GAACTGAAGT CCCTGATTGC TGCTTTTCAT GAGAAGGGGA TAAAGTGCCT
AGCTGACATA GTGATCAACC ACAGAACTGC AGAGAGGAAG GATGGGAGAG GAATATATTG TATCTTTGAA GGTGGTACTC
CAGATTCACG CCTTGATTGG GGTCCATCTT TCATTTGCAG AGATGACACT GCTTATTCTG ATGGTACTGG AAACAATGAC
AGTGGAGAGG GCTATGATGC TGCACCTGAC ATTGATCATC TCAATCCACA GGTGCAAAGA GAGTTGTCAG AATGGATGAA
CTGGCTCAAA ACTGAGATTG GTTTTGATGG ATGGAGGTTT GATTTTGTGA AGGGCTATGC CCCTAGCATC TCCAAGATCT
ATATGGAACA GACTAGGCCA GCTTTTGCAG TAGGTGAGAA ATGGGATTCT CTCTCATCTG GCCAGGATGG GAAGCCAAAC
TATAACCAAG ATAGTCACCG TGGGGCACTG GTGAATTGGG TTGAATCTGC AGGTGGAGCT ATTACTGCAT TTGATTTCAC
AACAAAAGGA ATTCTTCAGG CTGCTGTGCA AGGAGAATTG TGGAGGTTGA TAGATCCAAA TGGCAAGCCT CCTGGAATGA
TTGGTGTGAA ACCAGAAAAT GCAGTAACTT TCATTGACAA CCATGACACT GGTTCCACAC AGAGACTTTG GCCATTCCCT
TCTGACAAAG TCATGCAAGG ATATGCCTAC ATTCTAACAC ACCCTGGCAC CCCCTCAATA TTCTACGACC ACTTCTTTGA
TTGGGGCTTG AAGGAGCAGA TTGCCAAATT GAGTAGCATA AGGGTGAGGA ATGGGATCAA TGAGAAAAGC ACTGTTAAAA
TTATGGCATC TGAAGGTGAC CTTTATGTTG CAAAGATAGA CAACAAGATC ATGGTGAAGA TAGGGCCAAA GATGGACCTT
GGAAATCTTA TTCCTTCAAA TCTCCATGTT GCTACCTCTG GCCAAGACTA TGCCGTGTGG GAGTGA

>Vigan.09G059600.01
MDSFSRLSIF CLFISLLPLF SSPALLFQGF NWESSKKGGW YNSLKNSIPD LANAGITHVW LPPPSQSVSP EGYLPGRLYD
LDASRYGSKN ELKSLIAAFH EKGIKCLADI VINHRTAERK DGRGIYCIFE GGTPDSRLDW GPSFICRDDT AYSDGTGNND
SGEGYDAAPD IDHLNPQVQR ELSEWMNWLK TEIGFDGWRF DFVKGYAPSI SKIYMEQTRP AFAVGEKWDS LSSGQDGKPN
YNQDSHRGAL VNWVESAGGA ITAFDFTTKG ILQAAVQGEL WRLIDPNGKP PGMIGVKPEN AVTFIDNHDT GSTQRLWPFP
SDKVMQGYAY ILTHPGTPSI FYDHFFDWGL KEQIAKLSSI RVRNGINEKS TVKIMASEGD LYVAKIDNKI MVKIGPKMDL
GNLIPSNLHV ATSGQDYAVW E*