GBrowse Details

Vigan.09G062100.01

Basic Information:
Name: Vigan.09G062100.01
Multiple alignment
Variant Information
Position: Chr09:8418533..8423476 (+ strand)
Length: 4944
Functional Information:
Description: Similar to Uncharacterized protein. [I1JLI6, Glycine max]
InterPro: Amino acid transporter, transmembrane (IPR013057)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.34,3.15,19.55,41.01,1.06,7.53,17.43,41.66
Arabidopsis thaliana homolog: AT1G77690.1, AT2G21050.1, AT2G38120.1, AT5G01240.1
Automatic updates:
Name: NM_001353914 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max auxin transporter-like protein 3 (LAX3), mRNA.
PubMed ID: 27014306 NCBI(pubmed)
Status: Known Variant
Name: NM_001425048 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula auxin transporter-like protein 4 (LOC25494399), mRNA.
PubMed ID: 31837401 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr09:8418533..8418842 (+ strand)
Length: 310
Type: five_prime_UTR
Position: Chr09:8418843..8419022 (+ strand)
Length: 180
Type: CDS
Position: Chr09:8419102..8419287 (+ strand)
Length: 186
Type: CDS
Position: Chr09:8419399..8419511 (+ strand)
Length: 113
Type: CDS
Position: Chr09:8419621..8419804 (+ strand)
Length: 184
Type: CDS
Position: Chr09:8419921..8420018 (+ strand)
Length: 98
Type: CDS
Position: Chr09:8420669..8420876 (+ strand)
Length: 208
Type: CDS
Position: Chr09:8421733..8421990 (+ strand)
Length: 258
Type: CDS
Position: Chr09:8422964..8423194 (+ strand)
Length: 231
Type: CDS
Position: Chr09:8423195..8423476 (+ strand)
Length: 282
Type: three_prime_UTR


>Vigan.09G062100.01
CTCTTCTTAG TGAGTAAAAC GTATGTAAAC AGTTTGTGCC CACTTGTTTT TCTTTTTTTG TTTCCTTTTC TCTCTTGCCC
GCATCTCTTT TGTTTTGGAT TTGTGTGGGG GAGAAACCTG AAGTTGTTCG TTCTATTTTT GTTATTATTT TTTATTTGGA
ATTCTGCAAA GGAATTTTCA GTTATGTGGA TCTGGGCACT TTCTTGGCTT TCGTTTTCTG GGGCTGCGTT TTATATCATG
ATTTTTGTCT CATTTAGTGT CCTTTTATGT ATTTCAGATC TAGACACTGG TTTTGTGGAT AAGGGAGACA ATGTTGTCTC
AGAAGCAAGC AGAGGAAGCA ATAGTCACAA ACCTCAACGA GACAGAACAT GAAGTGGGAA GCACAAGGGA AGAAGAGAGG
GAGCAAGACC ACTCCATGTT CAGTCTCAAG AGCATCCTTT GGCATGGCGG TTCTGTCTGG GATGCATGGT TCAGCTGTGC
CTCAAATCAA GTGGCTCAAG TGCTCTTGAC ACTCCCATAC TCCTTCTCTC AACTTGGCAT GCTATCAGGC ATCTTGTTTC
AGGTGTTCTA TGGAATTATC GGAAGCTGGA CTGCTTATCT AATCAGTGTC CTCTACGTTG AGTACCGCAC CAGAAAGGAA
AAGGAAAACG TCAACTTCAA GAACCATGTC ATTCAGTGGT TCGAAGTCCT TGATGGGTTA CTTGGTCCAT ATTGGAAAGC
AGTGGGGCTA GCCTTCAACT GTACTTTCCT CCTCTTTGGA TCTGTGATAC AGCTTATAGC ATGTGCAAGT AACATCTATT
ACATAAATGA CAAATTGGAT AAACGAACTT GGACTTATAT TTTTGGAGCT TGCTGTGCCA CCACTGTGTT CATACCTTCC
TTCCACAATT ACCGAATCTG GTCATTTTTG GGTCTTGGAA TGACCACTTA CACGGCTTGG TACCTTGCTG TGGCAGCTAT
CCTTCATGGC CAGGTGGAAA ATGTTAAACA CTCGGGTCCC GCAAAGCTAG TGCTATACTT CACTGGAGCC ACTAACATAC
TCTACACCTT TGGCGGACAT GCTGTGACTG TAGAGATTAT GCATGCCATG TGGAAGCCCC AAAAGTTCAA GTACATCTAC
CTGCTGGCCA CTTTGTACGT TTTCACACTA ACGATTCCCT CCGCCGTCGC CGTCTATTGG GCTTTTGGTG ATATGCTTCT
TAACCACTCC AACGCCTTCT CTCTCCTTCC CCAGTCTGGC TTCCGTGATG CCGCCGTCAT CCTCATGCTC ATTCACCAGT
TCATCACATT TGGGTTTGCG TGCACTCCAT TGTATTTTGT GTGGGAGAAG GTGATTGGGA TGCATGACAC AAAGAGCATC
TGTTTGAGAG CACTTGCACG ATTGCCGGTG GTGATACCGA TATGGTTTTT GGCTATAATC TTTCCTTTCT TTGGTCCCAT
AAATTCAGCT GTTGGATCTC TGCTTGTTAG TTTCACTGTC TACATCATCC CTTCCTTAGC CCATATGCTC ACTTACAGAA
AAGCCACTGC CAGACAGAAT GCTGCAGAGA AGCCTCCTTT CTTCATGCCA AGTTGGACTG CAATGTATGT ATTGAATGCA
TTCATTGTTG TATGGGTTTT TGTTGTTGGA TTTGGGCTTG GAGGATGGGC CAGCATGACA AACTTTATAA GGCAAATTGA
TACATTTGGG CTTTTTGCTA AGTGCTACCA GTGCCCTCAA GCAACACCAC ATGTTGTGGC AGCACCACCC CCTCATGCTC
ATCATTAAAG CAAAAGCTTA TTCATTCACC ACAACATGGT AGAGTTCAGC AACAATCACA TTTTCCTCAA TACTTTGTAT
TATACAGGGG GGAAAATGTT GAACATATAC TTCCCCCTTT CTATGATGTG TGTGCTGGCT GGGTTTTACA TTGTTTTTGT
CCTTTTTCTT TGTTATATAG TATTTTGTCC CTCCCTTCTT GTAAGATTAG TTGATTAAAA CTAGTGTGTC AAATGTTATG
ATTCCTTTCC TATGAAATGC ACAGGCTAAT TAAATTAAAA TTAAACACTA 

>Vigan.09G062100.01
ATGTTGTCTC AGAAGCAAGC AGAGGAAGCA ATAGTCACAA ACCTCAACGA GACAGAACAT GAAGTGGGAA GCACAAGGGA
AGAAGAGAGG GAGCAAGACC ACTCCATGTT CAGTCTCAAG AGCATCCTTT GGCATGGCGG TTCTGTCTGG GATGCATGGT
TCAGCTGTGC CTCAAATCAA GTGGCTCAAG TGCTCTTGAC ACTCCCATAC TCCTTCTCTC AACTTGGCAT GCTATCAGGC
ATCTTGTTTC AGGTGTTCTA TGGAATTATC GGAAGCTGGA CTGCTTATCT AATCAGTGTC CTCTACGTTG AGTACCGCAC
CAGAAAGGAA AAGGAAAACG TCAACTTCAA GAACCATGTC ATTCAGTGGT TCGAAGTCCT TGATGGGTTA CTTGGTCCAT
ATTGGAAAGC AGTGGGGCTA GCCTTCAACT GTACTTTCCT CCTCTTTGGA TCTGTGATAC AGCTTATAGC ATGTGCAAGT
AACATCTATT ACATAAATGA CAAATTGGAT AAACGAACTT GGACTTATAT TTTTGGAGCT TGCTGTGCCA CCACTGTGTT
CATACCTTCC TTCCACAATT ACCGAATCTG GTCATTTTTG GGTCTTGGAA TGACCACTTA CACGGCTTGG TACCTTGCTG
TGGCAGCTAT CCTTCATGGC CAGGTGGAAA ATGTTAAACA CTCGGGTCCC GCAAAGCTAG TGCTATACTT CACTGGAGCC
ACTAACATAC TCTACACCTT TGGCGGACAT GCTGTGACTG TAGAGATTAT GCATGCCATG TGGAAGCCCC AAAAGTTCAA
GTACATCTAC CTGCTGGCCA CTTTGTACGT TTTCACACTA ACGATTCCCT CCGCCGTCGC CGTCTATTGG GCTTTTGGTG
ATATGCTTCT TAACCACTCC AACGCCTTCT CTCTCCTTCC CCAGTCTGGC TTCCGTGATG CCGCCGTCAT CCTCATGCTC
ATTCACCAGT TCATCACATT TGGGTTTGCG TGCACTCCAT TGTATTTTGT GTGGGAGAAG GTGATTGGGA TGCATGACAC
AAAGAGCATC TGTTTGAGAG CACTTGCACG ATTGCCGGTG GTGATACCGA TATGGTTTTT GGCTATAATC TTTCCTTTCT
TTGGTCCCAT AAATTCAGCT GTTGGATCTC TGCTTGTTAG TTTCACTGTC TACATCATCC CTTCCTTAGC CCATATGCTC
ACTTACAGAA AAGCCACTGC CAGACAGAAT GCTGCAGAGA AGCCTCCTTT CTTCATGCCA AGTTGGACTG CAATGTATGT
ATTGAATGCA TTCATTGTTG TATGGGTTTT TGTTGTTGGA TTTGGGCTTG GAGGATGGGC CAGCATGACA AACTTTATAA
GGCAAATTGA TACATTTGGG CTTTTTGCTA AGTGCTACCA GTGCCCTCAA GCAACACCAC ATGTTGTGGC AGCACCACCC
CCTCATGCTC ATCATTAA

>Vigan.09G062100.01
MLSQKQAEEA IVTNLNETEH EVGSTREEER EQDHSMFSLK SILWHGGSVW DAWFSCASNQ VAQVLLTLPY SFSQLGMLSG
ILFQVFYGII GSWTAYLISV LYVEYRTRKE KENVNFKNHV IQWFEVLDGL LGPYWKAVGL AFNCTFLLFG SVIQLIACAS
NIYYINDKLD KRTWTYIFGA CCATTVFIPS FHNYRIWSFL GLGMTTYTAW YLAVAAILHG QVENVKHSGP AKLVLYFTGA
TNILYTFGGH AVTVEIMHAM WKPQKFKYIY LLATLYVFTL TIPSAVAVYW AFGDMLLNHS NAFSLLPQSG FRDAAVILML
IHQFITFGFA CTPLYFVWEK VIGMHDTKSI CLRALARLPV VIPIWFLAII FPFFGPINSA VGSLLVSFTV YIIPSLAHML
TYRKATARQN AAEKPPFFMP SWTAMYVLNA FIVVWVFVVG FGLGGWASMT NFIRQIDTFG LFAKCYQCPQ ATPHVVAAPP
PHAHH*