GBrowse Details

Vigan.09G070000.01

Basic Information:
Name: Vigan.09G070000.01
Multiple alignment
Variant Information
Position: Chr09:9558994..9564769 (+ strand)
Length: 5776
Functional Information:
Description: Similar to Uncharacterized protein. [I1JLP8, Glycine max]
GO: Biological Process: proteolysis (GO:0006508)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: serine-type endopeptidase activity (GO:0004252)
InterPro: Peptidase S54, rhomboid (IPR002610)
Peptidase S54, rhomboid domain (IPR022764)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.10,0.27,4.49,2.03,7.59,4.05,34.79,3.70
Arabidopsis thaliana homolog: AT2G29050.1
Automatic updates:
Name: NM_001255208 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max inactive rhomboid protein 1-like (LOC100805186), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:9558994..9559152 (+ strand)
Length: 159
Type: five_prime_UTR
Position: Chr09:9559153..9559466 (+ strand)
Length: 314
Type: CDS
Position: Chr09:9560983..9561146 (+ strand)
Length: 164
Type: CDS
Position: Chr09:9561371..9561534 (+ strand)
Length: 164
Type: CDS
Position: Chr09:9561635..9561894 (+ strand)
Length: 260
Type: CDS
Position: Chr09:9563521..9563647 (+ strand)
Length: 127
Type: CDS
Position: Chr09:9564303..9564425 (+ strand)
Length: 123
Type: CDS
Position: Chr09:9564426..9564769 (+ strand)
Length: 344
Type: three_prime_UTR


>Vigan.09G070000.01
TTTCCATGTT GAACGATAAA CAAATACAAA TAATGTACAA AAAGTCCACC CGAAGTGGTT GAGCTAAACC TCCCATTTTC
CCTTCTTAAA ATCCTTACAT CACCTTCCTC TGACTCGATC CATTCCACTC CCAAACTCTT ACCAAATCAA CCCACATTCA
TGCCCGGAGA ACCACGCCCC TTGGAGATCC ACCTCAGGGT CAATTCCAAG AGAAGCAACG CCAACATGGT GCACCCTGTG
GCCGTGGAAA CTGTGTACCC GGTTCAGCCC CAGAGACAGG AAGTCAAGCA TTACCGCAAG TGGTTTCCTT GGTTGATACC
TCTCTTTGTT GTTGCTAACA TAGTTTTGTT TGTGATCACT ATGTATGTCA ACAACTGCCC CCATAATTCT GTCTCCTGCA
TTGCCACCTT CTTGGGTCGC TTCTCCTTCC AGCCCTTCAA AGAAAACCCC CTCTTGGGCC CTTCATCCTT GACGTTACAG
AAGGTGGGGG CTCTTGATGT GGGCAGAGTG GTTCATAGAC ACCAGGGGTG GCGCCTTATC AGTTGTATGT GGCTGCATGG
TGGGGTTTTC CATCTGTTGG CAAATATGTT GGGTATTCTA GTAATTGGAA TTCGGCTTGA GCAAGAATTT GGGTTTGTGC
TTATTGGACT GCTATTTGTC ATATCTGGAT TTGGGGGAAG TTTGCTTTCT GCTCTTTTCA TCCAGTCAAA CATTTCTGTG
GGTGCTTCTG GTGCACTTTT CGGCTTGCTG GGAGGCATGC TTTCGGAACT CATTACTAAC TGGACTATAT ATGAGAACAA
GCTGGCAGCA CTACTCACCC TTGTGATCAT CATCGTTATC AATCTAGCAG TGGGAATTCT CCCACATGTG GACAACTTTG
CTCATATTGG AGGCTTTCTT ACAGGATTTC TTCTCGGATT TGTGTTTCTG ATACGTCCCC AGTTTGGATG GGTTAACCAA
CGCTATGCTC CCCTAAATTA TTCTCCAGAA CGAGCTAAGC CTAAATTCAA AAAGTATCAG TGCATCTTAT GGGTCCTCTC
TCTTGTCATT CTAATTGTTG GGCTTTCTGT TGGGCTTGTC GCGCTTCTCC GTGGTGTTGA TGCAAATGAC CACTGCTCCT
GGTGCCATTA TCTGTCTTGT GTTCCAACGT CAAAATGGAG CTGCCATACA GAGCCATCAT ATTGTGTGTC AAATCAGCTT
GGTAACCAGC TGAATGTAAC ATGCTCAAGC AATGGTAAAT CCAGTACATA CTTCATGCAA GATCCAACCA GTTCCCAGAT
CCAGCAACTA TGTACTCAAC TTTGCAGTTG AGTTCTAACA AAAGTGATGA TCATTGGAAG ATGTTCATCT GTCCATAGTA
GTGTTTCTGG CTCTCAAACA AACTTCAGTG CTCTTTTATT TATAGACACG ATTAGAAAAT ATTCATTTTG CTTTTGTAGA
TTTGTTCATT TTCCAGTGTA TATAATATTG ATTGATTTTG TATTTCTTTA CTACCTTTGT GTGAGATCAA AGATACAGTT
ATTGATGATT AATGTATCAC CCTAACTCCT GTTTGCTAAT AGCTTGTGAT TGCATTACAA ATTTAGCTTA AGAAAATGTT
GTTAAGAATA GACTGCATTT ATGATTAATG TAAGCTAATT TAATATTAGT TAACG

>Vigan.09G070000.01
ATGCCCGGAG AACCACGCCC CTTGGAGATC CACCTCAGGG TCAATTCCAA GAGAAGCAAC GCCAACATGG TGCACCCTGT
GGCCGTGGAA ACTGTGTACC CGGTTCAGCC CCAGAGACAG GAAGTCAAGC ATTACCGCAA GTGGTTTCCT TGGTTGATAC
CTCTCTTTGT TGTTGCTAAC ATAGTTTTGT TTGTGATCAC TATGTATGTC AACAACTGCC CCCATAATTC TGTCTCCTGC
ATTGCCACCT TCTTGGGTCG CTTCTCCTTC CAGCCCTTCA AAGAAAACCC CCTCTTGGGC CCTTCATCCT TGACGTTACA
GAAGGTGGGG GCTCTTGATG TGGGCAGAGT GGTTCATAGA CACCAGGGGT GGCGCCTTAT CAGTTGTATG TGGCTGCATG
GTGGGGTTTT CCATCTGTTG GCAAATATGT TGGGTATTCT AGTAATTGGA ATTCGGCTTG AGCAAGAATT TGGGTTTGTG
CTTATTGGAC TGCTATTTGT CATATCTGGA TTTGGGGGAA GTTTGCTTTC TGCTCTTTTC ATCCAGTCAA ACATTTCTGT
GGGTGCTTCT GGTGCACTTT TCGGCTTGCT GGGAGGCATG CTTTCGGAAC TCATTACTAA CTGGACTATA TATGAGAACA
AGCTGGCAGC ACTACTCACC CTTGTGATCA TCATCGTTAT CAATCTAGCA GTGGGAATTC TCCCACATGT GGACAACTTT
GCTCATATTG GAGGCTTTCT TACAGGATTT CTTCTCGGAT TTGTGTTTCT GATACGTCCC CAGTTTGGAT GGGTTAACCA
ACGCTATGCT CCCCTAAATT ATTCTCCAGA ACGAGCTAAG CCTAAATTCA AAAAGTATCA GTGCATCTTA TGGGTCCTCT
CTCTTGTCAT TCTAATTGTT GGGCTTTCTG TTGGGCTTGT CGCGCTTCTC CGTGGTGTTG ATGCAAATGA CCACTGCTCC
TGGTGCCATT ATCTGTCTTG TGTTCCAACG TCAAAATGGA GCTGCCATAC AGAGCCATCA TATTGTGTGT CAAATCAGCT
TGGTAACCAG CTGAATGTAA CATGCTCAAG CAATGGTAAA TCCAGTACAT ACTTCATGCA AGATCCAACC AGTTCCCAGA
TCCAGCAACT ATGTACTCAA CTTTGCAGTT GA

>Vigan.09G070000.01
MPGEPRPLEI HLRVNSKRSN ANMVHPVAVE TVYPVQPQRQ EVKHYRKWFP WLIPLFVVAN IVLFVITMYV NNCPHNSVSC
IATFLGRFSF QPFKENPLLG PSSLTLQKVG ALDVGRVVHR HQGWRLISCM WLHGGVFHLL ANMLGILVIG IRLEQEFGFV
LIGLLFVISG FGGSLLSALF IQSNISVGAS GALFGLLGGM LSELITNWTI YENKLAALLT LVIIIVINLA VGILPHVDNF
AHIGGFLTGF LLGFVFLIRP QFGWVNQRYA PLNYSPERAK PKFKKYQCIL WVLSLVILIV GLSVGLVALL RGVDANDHCS
WCHYLSCVPT SKWSCHTEPS YCVSNQLGNQ LNVTCSSNGK SSTYFMQDPT SSQIQQLCTQ LCS*