GBrowse Details

Vigan.09G078900.01

Basic Information:
Name: Vigan.09G078900.01
Multiple alignment
Variant Information
Position: Chr09:11066967..11069238 (- strand)
Length: 2272
Functional Information:
Description: Similar to Chlorophyll a/b binding protein CP29. [Q9XQB2, Vigna radiata var. radiata]
GO: Biological Process: photosynthesis, light harvesting (GO:0009765)
Cellular Component: membrane (GO:0016020)
InterPro: Chlorophyll A-B binding protein, plant (IPR001344)
Chlorophyll A-B binding protein (IPR022796)
Chlorophyll a/b binding protein domain (IPR023329)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:13.50,6.08,386.73,3402.74,0.94,1186.86,12.29,551.92
Arabidopsis thaliana homolog: AT3G08940.2
Automatic updates:
Name: NM_001317327 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata chlorophyll a-b binding protein CP29.1, chloroplastic-like (LOC106774260), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001317414 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chlorophyll a-b binding protein CP29.2, chloroplastic-like (LOC100785415), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:11066967..11067391 (- strand)
Length: 425
Type: three_prime_UTR
Position: Chr09:11067392..11067757 (- strand)
Length: 366
Type: CDS
Position: Chr09:11068581..11069087 (- strand)
Length: 507
Type: CDS
Position: Chr09:11069088..11069238 (- strand)
Length: 151
Type: five_prime_UTR


>Vigan.09G078900.01
CTCCAGGATC CAACGCTTCA AAATCCCCAC TCGCGGATTA TCCAATCTCC CACCTCTCAT CAAATATATC TCCCATCCCT
CTCTCTCACA CCAACCACTA ACTCTACCAA GCACCACAAC TTCTCACCAC CGCGCACGTT AGCACAAACT CATGGCCACC
GCAACGGCTA CGGCAGCGGC AACGTCCTCA TTCATGGGGA CGCGCCTCCT GGACGCGCAT TCCGGGTCAG GGCGGATCCT
GGCACGATTC GGGTTCGGGT CGAAGAAGAA GGCCGCGCCC AAGAAGGTGT CGAAGGGTCC AGGCACGGAC AGGCCGTTGT
GGTACCCCGG TGCGAAGGCA CCGGAGTGGC TGGACGGGAG CCTTGTCGGT GACTACGGGT TCGACCCGTT CGGGCTCGGG
AAGCCCGCGG AGTATTTGCA GTTTGAACTG GACTCGCTGG ACCAGAACCT GGCCAAGAAC GAGGCCGGGA TCATCATCGG
AACCAGGACA GAAGGAGCGG ACGTGAAGTC GACGCCGTTC CAGCCCTACA GCGAGGTCTT CGGCCTCCAG AGGTTCCGCG
AGTGCGAGCT CATCCATGGA CGCTGGGCCA TGCTCGCCAC GCTCGGAGCC CTCTCCGTCG AGTGGCTCAC CGGTGTCACG
TGGCAGGACG CCGGCAAGGT GGAGCTAGTA GAAGGATCAT CATACCTTGG GCAACCACTT CCATTCTCAA TCACCACATT
GATTTGGATC GAGGTTCTGG TAATTGGGTA CATAGAGTTC CAGAGGAATG CAGAGCTTGA CCCAGAAAAG AGACTGTACC
CAGGTGGGAG CTACTTCGAC CCTCTTGGTT TGGCCTCAGA CCCAGAGAAG AAAGCCACTC TTCAATTGGC AGAGATCAAG
CACGCACGTC TTGCCATGGT GGGCTTCTTG GGCTTTGCAG TCCAAGCTGC TGCCACTGGC AAGGGCCCAC TCAACAACTG
GGCTACCCAC TTGAGTGACC CACTTCACAC AACCATCATT GACACCTTCT CCTCGTCTTC TTAAGAAAAA GTCTTGTGCC
TCGTGGCTAA ATTGTAAACG TCTTTCGGCT TTGGATTGTA ATTAATCAAA CATTTCACTT ATAGCTGCTA CTTGTGAAAC
TGGTAACTTG AATTGGAGAG GCTTAGTAGA GTTCTTCTGC TTCATCATAA AGTGCTATTC TCCTGTTACT GTTAATTAAG
AACGATGGAG GGCCAAAAGT ACTGATAAAA TTGAGATCAC CATGCAAGGT AAGGGCAGGA AATTGGTTTC AGGATATATT
GCAGATTTTA ATTTATTCAT TTCTTGACTT TGATTCTGGA TAACCACTAC CTTACTAAAG TTTGTGACAA TGGTTTTTAA
GTGTTAAAGA GGCAATTGAC AAAATTTATT GCATCTAATA CTGCGTTTTG ATTACATTAC ACAACAGCTT AATATATGAA
ATAGCATGG

>Vigan.09G078900.01
ATGGCCACCG CAACGGCTAC GGCAGCGGCA ACGTCCTCAT TCATGGGGAC GCGCCTCCTG GACGCGCATT CCGGGTCAGG
GCGGATCCTG GCACGATTCG GGTTCGGGTC GAAGAAGAAG GCCGCGCCCA AGAAGGTGTC GAAGGGTCCA GGCACGGACA
GGCCGTTGTG GTACCCCGGT GCGAAGGCAC CGGAGTGGCT GGACGGGAGC CTTGTCGGTG ACTACGGGTT CGACCCGTTC
GGGCTCGGGA AGCCCGCGGA GTATTTGCAG TTTGAACTGG ACTCGCTGGA CCAGAACCTG GCCAAGAACG AGGCCGGGAT
CATCATCGGA ACCAGGACAG AAGGAGCGGA CGTGAAGTCG ACGCCGTTCC AGCCCTACAG CGAGGTCTTC GGCCTCCAGA
GGTTCCGCGA GTGCGAGCTC ATCCATGGAC GCTGGGCCAT GCTCGCCACG CTCGGAGCCC TCTCCGTCGA GTGGCTCACC
GGTGTCACGT GGCAGGACGC CGGCAAGGTG GAGCTAGTAG AAGGATCATC ATACCTTGGG CAACCACTTC CATTCTCAAT
CACCACATTG ATTTGGATCG AGGTTCTGGT AATTGGGTAC ATAGAGTTCC AGAGGAATGC AGAGCTTGAC CCAGAAAAGA
GACTGTACCC AGGTGGGAGC TACTTCGACC CTCTTGGTTT GGCCTCAGAC CCAGAGAAGA AAGCCACTCT TCAATTGGCA
GAGATCAAGC ACGCACGTCT TGCCATGGTG GGCTTCTTGG GCTTTGCAGT CCAAGCTGCT GCCACTGGCA AGGGCCCACT
CAACAACTGG GCTACCCACT TGAGTGACCC ACTTCACACA ACCATCATTG ACACCTTCTC CTCGTCTTCT TAA

>Vigan.09G078900.01
MATATATAAA TSSFMGTRLL DAHSGSGRIL ARFGFGSKKK AAPKKVSKGP GTDRPLWYPG AKAPEWLDGS LVGDYGFDPF
GLGKPAEYLQ FELDSLDQNL AKNEAGIIIG TRTEGADVKS TPFQPYSEVF GLQRFRECEL IHGRWAMLAT LGALSVEWLT
GVTWQDAGKV ELVEGSSYLG QPLPFSITTL IWIEVLVIGY IEFQRNAELD PEKRLYPGGS YFDPLGLASD PEKKATLQLA
EIKHARLAMV GFLGFAVQAA ATGKGPLNNW ATHLSDPLHT TIIDTFSSSS *