GBrowse Details

Vigan.09G082400.01

Basic Information:
Name: Vigan.09G082400.01
Multiple alignment
Variant Information
Position: Chr09:11456135..11457490 (- strand)
Length: 1356
Functional Information:
Description: Similar to Rhodanese-like family protein-like protein. [G8A2L4, Medicago truncatula]
InterPro: Rhodanese-like domain (IPR001763)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.25,0.11,8.53,60.99,0.00,12.97,3.57,4.75
Arabidopsis thaliana homolog: AT3G08920.1
Automatic updates:
Name: NM_001317461 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max rhodanese-like domain-containing protein 10 (LOC100795945), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:11456135..11456464 (- strand)
Length: 330
Type: three_prime_UTR
Position: Chr09:11456465..11456657 (- strand)
Length: 193
Type: CDS
Position: Chr09:11456889..11457358 (- strand)
Length: 470
Type: CDS
Position: Chr09:11457359..11457490 (- strand)
Length: 132
Type: five_prime_UTR


>Vigan.09G082400.01
CTCTTTCAAT ATATATTAAG CTTGTAGCAA AAAGACAAGG AAAATCTCAT ACATCAGATT TTTCTTGTTA TCTGAAACCA
ATGAAATCAA ATCCTTCACA GCAACACAGA AGGGAGAGAG AAACATAGGA ATATGGCAAC CCATCTGAAT CATGTGTTAA
GAACTTCAAT TCTGAAGCAC AAAACACAAT CAGAGACCCC TTTGAGAACC TCACGAAGAA CCCCAAGATT TGAAGTGATC
AATGCAACAA CATCTTCCAC CAGCAGTGCA AGGCAGCTCA TAGAGTCTGG CACAGTGAGG CCTATATTGC CCAAAGATGC
TTCCTCAGCA ATAAACTCAG AGGGCTTTAT TCTGCTTGAT GTTAGGCCAT ATTGGGAGAG AGAGAAGGCA CGTGTGACAG
GGTCTTTGCA CGTGCCAATC TTTGTCGAAG ACAAGGATAA CAGCCCTATA ACTTTACTTA AGAAGTGGGT GCATTTTGGG
TACATTGGGT TGTGGACTGG CCAGTACCTC ACTACTGTGA ATTCTGAGTT CCTTAGTCAA GTGGAAAAAG CCGTTCCTGG
TAAGGACACA AAGCTTCTTG TGGCATGTGG AGAAGGATTG AGGTCAATGA CAGCAGCTTC AAAACTGTGT AATGGAGGTT
ACAAAAATCT GGGATGGTTG GCTGGTGGAT TTAATCGTTC AAAGGACAAT GACTTCCCAT CAGCAGAAGG AAAAGAGAAG
TTGCAGTATG CTACAATTGG GGGAGTTTCT TACATATTCC TTCAGTTGCT CATATTTCTA AAGGCTGTGG GATAAGGAGT
TATTTTGACA CCTTTTAATG TTGTTCATGT TGTGCAACTT TTGAATCTTT AAGCCTCTGT AGCCTAGTTA CAACTACATC
TTCTTCAACT TCCATATAAA GTATGACGTT TTGCAGTTTT GTAGATAGTT ATGCCAGTTC CCTGTTTGAT ACAATTGCAG
AAGTAGCTTG TCATTTATCA TTGCATATAT TAAATCTCTT GTTTTGGTAT CATAGAGTGA ACATTCCAAT TTATTTTATG
AATTTCCTAA TCTATGTTTA CTAAATAGCT AATTTTGGTT TATTTTTCAT TATGAAAATG TTGGCAATGT AATTTTTTTT
TCCGG

>Vigan.09G082400.01
ATGGCAACCC ATCTGAATCA TGTGTTAAGA ACTTCAATTC TGAAGCACAA AACACAATCA GAGACCCCTT TGAGAACCTC
ACGAAGAACC CCAAGATTTG AAGTGATCAA TGCAACAACA TCTTCCACCA GCAGTGCAAG GCAGCTCATA GAGTCTGGCA
CAGTGAGGCC TATATTGCCC AAAGATGCTT CCTCAGCAAT AAACTCAGAG GGCTTTATTC TGCTTGATGT TAGGCCATAT
TGGGAGAGAG AGAAGGCACG TGTGACAGGG TCTTTGCACG TGCCAATCTT TGTCGAAGAC AAGGATAACA GCCCTATAAC
TTTACTTAAG AAGTGGGTGC ATTTTGGGTA CATTGGGTTG TGGACTGGCC AGTACCTCAC TACTGTGAAT TCTGAGTTCC
TTAGTCAAGT GGAAAAAGCC GTTCCTGGTA AGGACACAAA GCTTCTTGTG GCATGTGGAG AAGGATTGAG GTCAATGACA
GCAGCTTCAA AACTGTGTAA TGGAGGTTAC AAAAATCTGG GATGGTTGGC TGGTGGATTT AATCGTTCAA AGGACAATGA
CTTCCCATCA GCAGAAGGAA AAGAGAAGTT GCAGTATGCT ACAATTGGGG GAGTTTCTTA CATATTCCTT CAGTTGCTCA
TATTTCTAAA GGCTGTGGGA TAA

>Vigan.09G082400.01
MATHLNHVLR TSILKHKTQS ETPLRTSRRT PRFEVINATT SSTSSARQLI ESGTVRPILP KDASSAINSE GFILLDVRPY
WEREKARVTG SLHVPIFVED KDNSPITLLK KWVHFGYIGL WTGQYLTTVN SEFLSQVEKA VPGKDTKLLV ACGEGLRSMT
AASKLCNGGY KNLGWLAGGF NRSKDNDFPS AEGKEKLQYA TIGGVSYIFL QLLIFLKAVG *