GBrowse Details

Vigan.09G082600.01

Basic Information:
Name: Vigan.09G082600.01
Multiple alignment
Variant Information
Position: Chr09:11511639..11515094 (- strand)
Length: 3456
Functional Information:
Description: Similar to Uncharacterized protein. [I1N2Y0, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: histone binding (GO:0042393)
InterPro: Zinc finger, PHD-type (IPR001965)
Zinc finger, FYVE/PHD-type (IPR011011)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Zinc finger, PHD-type, conserved site (IPR019786)
Zinc finger, PHD-finger (IPR019787)
Alfin (IPR021998)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:71.32,76.03,71.77,63.46,68.94,88.05,88.76,43.41
Automatic updates:
Name: NM_001252902 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PHD finger protein ALFIN-LIKE 1-like (LOC100793126), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255606 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PHD finger protein ALFIN-LIKE 1-like (LOC100779170), mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr09:11511639..11512052 (- strand)
Length: 414
Type: three_prime_UTR
Position: Chr09:11512053..11512304 (- strand)
Length: 252
Type: CDS
Position: Chr09:11512994..11513114 (- strand)
Length: 121
Type: CDS
Position: Chr09:11513905..11514127 (- strand)
Length: 223
Type: CDS
Position: Chr09:11514687..11514719 (- strand)
Length: 33
Type: CDS
Position: Chr09:11514808..11514898 (- strand)
Length: 91
Type: CDS
Position: Chr09:11514899..11515094 (- strand)
Length: 196
Type: five_prime_UTR


>Vigan.09G082600.01
CGCAGACATA CACTCTTCCA CTATGTCTGT TGTTCTATTT ATTATTTTCC TCTCCAAATT CCAGCCTCTT TCTCTCAGTC
CCTAACACCA TCACATGCAC CCGCGATCCC TACGATCCCT TCCCATGGTC TCGACCCTGC ACCCACGTCG CGCCTTCTAG
AACCTTCCCT TCAGATCTCA ATTGCCCCTT CCTTTCATGC AAATGGCTTC CACTCCCCGC ACCGTCGAAG AGATCTTCAA
GGATTACACC GCCCGAAGAA CCGCCATCGT TCGCGCTCTC TCTCAAGATG TCGATGAATT CTACGGACTC TGTGATCCAG
ATAAGGAGAA CCTGTGCCTC TATGGACATC CGAATGAGAC TTGGGAGGTG ACTTTGCCTG CGGAGGAAGT TCCGCCGGAG
CTACCGGAGC CTGCTCTTGG AATCAATTTT GCAAGGGATG GCATGAACCG CAGGGACTGG CTTTCTCTGG TTGCCGTGCA
CAGTGATTCG TGGCTGCTTT CTGTGGCTTT TTATCTTGGA GCTCGTCTTA ACCGCAATGA AAGGAAACGT TTGTTTGGCT
TGATAAATGA TCTTCCTACT GTTTTTGAAG TTGTGACTGA GAGGAAGCCG GTAAAGGACA AGCCCACAGC AGACAGTGGA
AGCAAATCTA GGAGCAGCAC CAAGAGATCA AGTGATGGGC AAGTTAAAAG CAACCCGAAG TTTGCAGATG AAGGATATGA
AGAGGAGGAT GACGAGCATA GTGAAACCCT GTGTGGGAGC TGTGGCGGAA ATTACAATGC AGACGAATTT TGGATTGGTT
GTGACATATG TGAGAGGTGG TTCCATGGGA AATGTGTGAA GATTACTCCT GCAAAAGCTG AGAGCATAAA GCAATACAAA
TGTCCATCAT GCAGCTTGAG GCGGGGCAGG CCCTAAGCGA GGGCAATCTG AGAACTGAAT AATACTGTTT CATGGCCGAC
AAGATACTGT TATATTGTTG CATCTCCTAC AGAAGTTTGT GTAAACAGTA TAGTATCTAT GTCTGATCAT AATCTTTCAG
ATTAAGTTAA TTTCTTCTAC CCAGATTAAT CATCAGTGTA TGTTATATAA TTTATAGAAT AGGATACCTT ACATTCTATT
TTGTCGATTA ATCTATATTT TGCTTGAATT TACCAGGTGT ATGTATGCTT ATTTTATTTT GTATCTGAAT TCTGACACAG
AAGGTAGCTG GTAAAATACT GAGGTGTGAC CCACCATTCC TGGATTCTTC TAATTCTATA ACTATTGTGT TACCGAATAG
GTTAATGAAT GTCTTTTCTG TGTTATTCTA TTTTTACATT ACATACGTGG 

>Vigan.09G082600.01
ATGCAAATGG CTTCCACTCC CCGCACCGTC GAAGAGATCT TCAAGGATTA CACCGCCCGA AGAACCGCCA TCGTTCGCGC
TCTCTCTCAA GATGTCGATG AATTCTACGG ACTCTGTGAT CCAGATAAGG AGAACCTGTG CCTCTATGGA CATCCGAATG
AGACTTGGGA GGTGACTTTG CCTGCGGAGG AAGTTCCGCC GGAGCTACCG GAGCCTGCTC TTGGAATCAA TTTTGCAAGG
GATGGCATGA ACCGCAGGGA CTGGCTTTCT CTGGTTGCCG TGCACAGTGA TTCGTGGCTG CTTTCTGTGG CTTTTTATCT
TGGAGCTCGT CTTAACCGCA ATGAAAGGAA ACGTTTGTTT GGCTTGATAA ATGATCTTCC TACTGTTTTT GAAGTTGTGA
CTGAGAGGAA GCCGGTAAAG GACAAGCCCA CAGCAGACAG TGGAAGCAAA TCTAGGAGCA GCACCAAGAG ATCAAGTGAT
GGGCAAGTTA AAAGCAACCC GAAGTTTGCA GATGAAGGAT ATGAAGAGGA GGATGACGAG CATAGTGAAA CCCTGTGTGG
GAGCTGTGGC GGAAATTACA ATGCAGACGA ATTTTGGATT GGTTGTGACA TATGTGAGAG GTGGTTCCAT GGGAAATGTG
TGAAGATTAC TCCTGCAAAA GCTGAGAGCA TAAAGCAATA CAAATGTCCA TCATGCAGCT TGAGGCGGGG CAGGCCCTAA


>Vigan.09G082600.01
MQMASTPRTV EEIFKDYTAR RTAIVRALSQ DVDEFYGLCD PDKENLCLYG HPNETWEVTL PAEEVPPELP EPALGINFAR
DGMNRRDWLS LVAVHSDSWL LSVAFYLGAR LNRNERKRLF GLINDLPTVF EVVTERKPVK DKPTADSGSK SRSSTKRSSD
GQVKSNPKFA DEGYEEEDDE HSETLCGSCG GNYNADEFWI GCDICERWFH GKCVKITPAK AESIKQYKCP SCSLRRGRP*