GBrowse Details

Vigan.09G082800.01

Basic Information:
Name: Vigan.09G082800.01
Multiple alignment
Variant Information
Position: Chr09:11620984..11624051 (+ strand)
Length: 3068
Functional Information:
Description: Similar to Uncharacterized protein. [K7KD40, Glycine max]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
InterPro: Oxoglutarate/iron-dependent dioxygenase (IPR005123)
Non-haem dioxygenase N-terminal domain (IPR026992)
Isopenicillin N synthase-like (IPR027443)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.08,0.09,28.77,11.12,0.50,36.19,0.53,32.48
Automatic updates:
Name: NM_001367054 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max anthocyanidin synthase (LOC100809662), mRNA.
PubMed ID: 28960323 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr09:11620984..11621060 (+ strand)
Length: 77
Type: five_prime_UTR
Position: Chr09:11621061..11621587 (+ strand)
Length: 527
Type: CDS
Position: Chr09:11623148..11623481 (+ strand)
Length: 334
Type: CDS
Position: Chr09:11623597..11623854 (+ strand)
Length: 258
Type: CDS
Position: Chr09:11623855..11624051 (+ strand)
Length: 197
Type: three_prime_UTR


>Vigan.09G082800.01
AAATACACTA CTAGTGTGGT GTTTGCTTCC ATTATCTAAT AACACCCTTT TGCTTTTTGT TCTCAAAAAA CACAAGAATG
ATGGCATGCC AAAATTGGCC TGAGCCAGTG ATTAGAGTCC AAGCTTTGGC TGAAAGTGGC TTAACCACAA TCCCTGAACG
TTTCATAAAG CCTAAGTCCC AAAGGCCTAC TGTTTACAGC CATGCTTCAA ACCAACCCAA TTACTCTCAC ACTACTCGTG
AGGACATCAA CATCCCCATA ATTGACATGA AACACCTCTA CGGCATGGAG GAGAGGCGGC GGGAGGAAGA GCTCTACCGT
GTGGCGGCAG CGTGCCAAGA ATGGGGTTTT TTCCAGGTGG TGAACCATGG TGTGAGCCAT GAGTTGATGA AGAGTGCCAG
GGAGGTGTGG CGTGAGTTCT TTCACCAACC AATTGAGCTG AAAGAGGAAT ATGCTAATAC ACCACTCACT TACGAAGGCT
ATGGAAGCAG GTTGGGAGTG AAAAAAGGAG CCATTTTGGA TTGGAGTGAC TATTTCTTTC TTCATTACAT GCCTTGTTCC
CTTAGGGACC AAAACAAGTG GCCAAACCTC CCAACATCCT TAAGGAATGT GATAGCTGAA TATGGTGAAG AAGTTGTTAA
GCTAGGAGGA AGGGTTCTTG AGATACTGTC AGAGAATCTT GGGCTGAGAA AGGATTTTCT GATGAATGCA TTTGGTGGGG
AGAAAGATAT TGGTGCTTGC TTAAGGGTGA ATTTCTATCC AAAGTGCCCA CAACCTGATC TCACTATGGG TTTGTCCTCT
CACTCAGACC CTGGTGGCAT GACCATTCTT CTCCCTGATG AAAATGTTTC TGGTCTTCAA GTTCGCAGAG GAGACGATTG
GATCACTGTT AAACCCACCC CAAATGCTTT TATCATCAAC ATTGGTGACC AAATTCAGGT GCTGAGCAAT GCTGTTTACA
AGAGCATAGA GCACAGGGTG ATTGTGAACT CAGACAAAGA TAGAGTTTCA TTGGCTTTTT TCTATAACCC CAGGAGTGAT
ATACCTATTG AACCTGCCAA GGAGCTTGTG ACTGAGGATA GGCCAGCACT GTACCCATCA AAAACTTTTG ATGAGTATAG
ACTTTACATA AGGACAAAAG GACCTAGTGG AAAAGCTCAA GTTGAATCTT TGATTTCCAA ATGTGATTCA AGTTGAGTAG
TTTGAAGTAC ACACAATTAA TTTGCATATG AATAATTGAT CATCGATTGT ATTTTCATTT GAGTCTCAAT TAATCTATAT
ATCCCACTCT TATCTCGTAT ACTTTCTTCT GTTTCTCTTA CCCCCTATGT GTTTGAGTTA TTGCTTCAGT CAATTCAATA
AAGAAAAGAA AAAGAAAGCT AATCTTTCAA GGA

>Vigan.09G082800.01
ATGATGGCAT GCCAAAATTG GCCTGAGCCA GTGATTAGAG TCCAAGCTTT GGCTGAAAGT GGCTTAACCA CAATCCCTGA
ACGTTTCATA AAGCCTAAGT CCCAAAGGCC TACTGTTTAC AGCCATGCTT CAAACCAACC CAATTACTCT CACACTACTC
GTGAGGACAT CAACATCCCC ATAATTGACA TGAAACACCT CTACGGCATG GAGGAGAGGC GGCGGGAGGA AGAGCTCTAC
CGTGTGGCGG CAGCGTGCCA AGAATGGGGT TTTTTCCAGG TGGTGAACCA TGGTGTGAGC CATGAGTTGA TGAAGAGTGC
CAGGGAGGTG TGGCGTGAGT TCTTTCACCA ACCAATTGAG CTGAAAGAGG AATATGCTAA TACACCACTC ACTTACGAAG
GCTATGGAAG CAGGTTGGGA GTGAAAAAAG GAGCCATTTT GGATTGGAGT GACTATTTCT TTCTTCATTA CATGCCTTGT
TCCCTTAGGG ACCAAAACAA GTGGCCAAAC CTCCCAACAT CCTTAAGGAA TGTGATAGCT GAATATGGTG AAGAAGTTGT
TAAGCTAGGA GGAAGGGTTC TTGAGATACT GTCAGAGAAT CTTGGGCTGA GAAAGGATTT TCTGATGAAT GCATTTGGTG
GGGAGAAAGA TATTGGTGCT TGCTTAAGGG TGAATTTCTA TCCAAAGTGC CCACAACCTG ATCTCACTAT GGGTTTGTCC
TCTCACTCAG ACCCTGGTGG CATGACCATT CTTCTCCCTG ATGAAAATGT TTCTGGTCTT CAAGTTCGCA GAGGAGACGA
TTGGATCACT GTTAAACCCA CCCCAAATGC TTTTATCATC AACATTGGTG ACCAAATTCA GGTGCTGAGC AATGCTGTTT
ACAAGAGCAT AGAGCACAGG GTGATTGTGA ACTCAGACAA AGATAGAGTT TCATTGGCTT TTTTCTATAA CCCCAGGAGT
GATATACCTA TTGAACCTGC CAAGGAGCTT GTGACTGAGG ATAGGCCAGC ACTGTACCCA TCAAAAACTT TTGATGAGTA
TAGACTTTAC ATAAGGACAA AAGGACCTAG TGGAAAAGCT CAAGTTGAAT CTTTGATTTC CAAATGTGAT TCAAGTTGA

>Vigan.09G082800.01
MMACQNWPEP VIRVQALAES GLTTIPERFI KPKSQRPTVY SHASNQPNYS HTTREDINIP IIDMKHLYGM EERRREEELY
RVAAACQEWG FFQVVNHGVS HELMKSAREV WREFFHQPIE LKEEYANTPL TYEGYGSRLG VKKGAILDWS DYFFLHYMPC
SLRDQNKWPN LPTSLRNVIA EYGEEVVKLG GRVLEILSEN LGLRKDFLMN AFGGEKDIGA CLRVNFYPKC PQPDLTMGLS
SHSDPGGMTI LLPDENVSGL QVRRGDDWIT VKPTPNAFII NIGDQIQVLS NAVYKSIEHR VIVNSDKDRV SLAFFYNPRS
DIPIEPAKEL VTEDRPALYP SKTFDEYRLY IRTKGPSGKA QVESLISKCD SS*