GBrowse Details

Vigan.09G084200.01

Basic Information:
Name: Vigan.09G084200.01
Multiple alignment
Variant Information
Position: Chr09:11883013..11885196 (+ strand)
Length: 2184
Functional Information:
Description: Similar to 7S globulin-3. [A4PIA0, Phaseolus angularis]
GO: Molecular Function: nutrient reservoir activity (GO:0045735)
InterPro: Cupin 1 (IPR006045)
RmlC-like cupin domain (IPR011051)
RmlC-like jelly roll fold (IPR014710)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:47.65,6.60,0.17,0.00,0.00,5060.02,0.39,0.57
Arabidopsis thaliana homolog: AT3G22640.1
Automatic updates:
Name: NM_001317302 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata beta-conglycinin, beta chain-like (LOC106773660), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:11883013..11883055 (+ strand)
Length: 43
Type: five_prime_UTR
Position: Chr09:11883056..11883389 (+ strand)
Length: 334
Type: CDS
Position: Chr09:11883469..11883644 (+ strand)
Length: 176
Type: CDS
Position: Chr09:11883736..11883816 (+ strand)
Length: 81
Type: CDS
Position: Chr09:11883940..11884239 (+ strand)
Length: 300
Type: CDS
Position: Chr09:11884364..11884640 (+ strand)
Length: 277
Type: CDS
Position: Chr09:11884745..11884947 (+ strand)
Length: 203
Type: CDS
Position: Chr09:11884948..11885196 (+ strand)
Length: 249
Type: three_prime_UTR


>Vigan.09G084200.01
CATCCAATAC CCCAACCCAA CTGATATTCA ATACTACTAC ACTATGCTGA GAGTAAGGGT TCAGTTGTTG CTGGGAATTC
TTTTCCTGGC ATCACTTTCT GTCTCTTTCG GCATTGTCCA CCGGGAGCAC CAAGAGAGCC AAGAAGAGTC TGATTCAAGA
GGAGAAAATA ACCCCTTCTA CTTCAGCTCC GACAGGAGGT TCCACACTCT ATTCACAAAC CAATATGGTC ACCTTCGGAT
CCTCCACAGG TTCGACCAAC GCTCCAAACA AATTCAGAAT CTTGAAAACT ACCGTGTGGT AGAGTTCAAG TCCAAACCCA
ACACCCTCCT TCTTCCTCAC CATGCTGATG CCGATTTCCT CCTAGTCGTC CTTAATGGGA GAGCCATACT CACTTTGGTG
AACCCTGACA GCAGAGACTC CTACATTCTT GAGCAAGGCC ATGCTCAGAA AATCCCTGCA GGAACCACTT TCTTTTTGGT
TAACCCTGAC GACAACGAGA ATCTCAGAAT AATCAAACTC GCCATACCTG TTAACAACCC TCACAGATTT CAAGACTTTT
TCCTATCTAG CACAGAAGCC CAACAATCCT ACTTGAGAGG CTTCAGCAAG AATATTCTAG AGGCCTCCTT CGATAGCGAC
TTCAAGGAGA TAAACAGGGT TCTATTTGGA GAGGAGAGAC AACAGCAGCA AGGGGAAGAG AGTCGGGAAG AGGGAGTGAT
TGTAGAACTT AAAAGGGAAC AGATTCAGGA ACTGATGAAA CATGCCAAAT CTAGTTCAAG GAAAGAACTC TCCTCCCAAG
ATGAACCATT CAACCTGAGA AACAGCAAAC CCATCTACTC AAACAAATTT GGAAGGTGGT ATGAGATGAC CCCAGAGAAA
AACCCCCAAC TTAAGGACTT GGACGTGTTC ATCAGTTCTG TGGATATGAA AGAGGGAGCC CTTCTTTTGC CACACTACAA
TTCTAAGGCC ATAGTGATAA TGGTGATCAA TGAAGGAGAA GCAAAGATTG AACTTGTTGG CCTAAGCGAT CAGCAGCAGC
AGAAGCAGCA AGAGGAAAGC TTGGAAGTGC AGAGATATAG AGCTGAGTTG TCTGAAGACG ATGTATTTGT AATCCCAGCA
GCTTATCCAG TTGCCATCAA CGCAACCTCC AATCTAAATT TCTTTGCTTT CGGTATCAAT GCTGAGAACA ACCAGAGGAA
TTTCCTTGCA GGTGGGAAAG ACAATGTGAT GAGCGAGATA CCTACAGAGG TGTTGGAGGT TAGCTTCCCT GCGTCTGGTA
AGAAGGTTGA GAAGTTGATA AAGAAGCAGA GTGAATCCCA CTTTGTGGAT GCACAGCCTG AGCAACAGCA GAGGGAGGAA
GGGCATAAGG GAAGAAAGGG TTCATTATCT TCAATTTTGG GCAGTCTCTA CTGAATAAGT TTCTAGTAAG ATACATGTGA
GAGAGCTCAC ACTGAGCTTC GAATTAACGT GTCCGACATT GTAACAAATA AGTAGAGCTC CACATGGCTT TTTCTACTAT
CAATAATCAA TAAATTCAGC CTTTATATCA TGCTTCTCTT TTACCTTCTT CAACTGTCTG GTCTGTCTGT GCTCGCTTAA
CTTTGTTAAG GTTGTCATGT ACCAAAATAC ATATCCAATT AACTTTTAAG TGAAATGTCT GAG

>Vigan.09G084200.01
ATGCTGAGAG TAAGGGTTCA GTTGTTGCTG GGAATTCTTT TCCTGGCATC ACTTTCTGTC TCTTTCGGCA TTGTCCACCG
GGAGCACCAA GAGAGCCAAG AAGAGTCTGA TTCAAGAGGA GAAAATAACC CCTTCTACTT CAGCTCCGAC AGGAGGTTCC
ACACTCTATT CACAAACCAA TATGGTCACC TTCGGATCCT CCACAGGTTC GACCAACGCT CCAAACAAAT TCAGAATCTT
GAAAACTACC GTGTGGTAGA GTTCAAGTCC AAACCCAACA CCCTCCTTCT TCCTCACCAT GCTGATGCCG ATTTCCTCCT
AGTCGTCCTT AATGGGAGAG CCATACTCAC TTTGGTGAAC CCTGACAGCA GAGACTCCTA CATTCTTGAG CAAGGCCATG
CTCAGAAAAT CCCTGCAGGA ACCACTTTCT TTTTGGTTAA CCCTGACGAC AACGAGAATC TCAGAATAAT CAAACTCGCC
ATACCTGTTA ACAACCCTCA CAGATTTCAA GACTTTTTCC TATCTAGCAC AGAAGCCCAA CAATCCTACT TGAGAGGCTT
CAGCAAGAAT ATTCTAGAGG CCTCCTTCGA TAGCGACTTC AAGGAGATAA ACAGGGTTCT ATTTGGAGAG GAGAGACAAC
AGCAGCAAGG GGAAGAGAGT CGGGAAGAGG GAGTGATTGT AGAACTTAAA AGGGAACAGA TTCAGGAACT GATGAAACAT
GCCAAATCTA GTTCAAGGAA AGAACTCTCC TCCCAAGATG AACCATTCAA CCTGAGAAAC AGCAAACCCA TCTACTCAAA
CAAATTTGGA AGGTGGTATG AGATGACCCC AGAGAAAAAC CCCCAACTTA AGGACTTGGA CGTGTTCATC AGTTCTGTGG
ATATGAAAGA GGGAGCCCTT CTTTTGCCAC ACTACAATTC TAAGGCCATA GTGATAATGG TGATCAATGA AGGAGAAGCA
AAGATTGAAC TTGTTGGCCT AAGCGATCAG CAGCAGCAGA AGCAGCAAGA GGAAAGCTTG GAAGTGCAGA GATATAGAGC
TGAGTTGTCT GAAGACGATG TATTTGTAAT CCCAGCAGCT TATCCAGTTG CCATCAACGC AACCTCCAAT CTAAATTTCT
TTGCTTTCGG TATCAATGCT GAGAACAACC AGAGGAATTT CCTTGCAGGT GGGAAAGACA ATGTGATGAG CGAGATACCT
ACAGAGGTGT TGGAGGTTAG CTTCCCTGCG TCTGGTAAGA AGGTTGAGAA GTTGATAAAG AAGCAGAGTG AATCCCACTT
TGTGGATGCA CAGCCTGAGC AACAGCAGAG GGAGGAAGGG CATAAGGGAA GAAAGGGTTC ATTATCTTCA ATTTTGGGCA
GTCTCTACTG A

>Vigan.09G084200.01
MLRVRVQLLL GILFLASLSV SFGIVHREHQ ESQEESDSRG ENNPFYFSSD RRFHTLFTNQ YGHLRILHRF DQRSKQIQNL
ENYRVVEFKS KPNTLLLPHH ADADFLLVVL NGRAILTLVN PDSRDSYILE QGHAQKIPAG TTFFLVNPDD NENLRIIKLA
IPVNNPHRFQ DFFLSSTEAQ QSYLRGFSKN ILEASFDSDF KEINRVLFGE ERQQQQGEES REEGVIVELK REQIQELMKH
AKSSSRKELS SQDEPFNLRN SKPIYSNKFG RWYEMTPEKN PQLKDLDVFI SSVDMKEGAL LLPHYNSKAI VIMVINEGEA
KIELVGLSDQ QQQKQQEESL EVQRYRAELS EDDVFVIPAA YPVAINATSN LNFFAFGINA ENNQRNFLAG GKDNVMSEIP
TEVLEVSFPA SGKKVEKLIK KQSESHFVDA QPEQQQREEG HKGRKGSLSS ILGSLY*