GBrowse Details

Vigan.09G084900.01

Basic Information:
Name: Vigan.09G084900.01
Multiple alignment
Variant Information
Position: Chr09:11962637..11963937 (+ strand)
Length: 1301
Functional Information:
Description: Similar to Em protein. [Q41685, Vigna radiata var. radiata]
InterPro: Stress induced protein (IPR000389)
Small hydrophilic plant seed protein, conserved site (IPR022377)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1485.89,0.00,0.35,11.89,6.26,30.39,0.14,6.35
Arabidopsis thaliana homolog: AT2G40170.1
Automatic updates:
Name: NM_001250257 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein SLE3 (SLE3), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250358 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max Protein SLE2 (SLE2), mRNA.
PubMed ID: 23805145 NCBI(pubmed)
23017910 NCBI(pubmed)
21455835 NCBI(pubmed)
9046601 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr09:11962637..11963030 (+ strand)
Length: 394
Type: five_prime_UTR
Position: Chr09:11963031..11963148 (+ strand)
Length: 118
Type: CDS
Position: Chr09:11963388..11963569 (+ strand)
Length: 182
Type: CDS
Position: Chr09:11963570..11963937 (+ strand)
Length: 368
Type: three_prime_UTR


>Vigan.09G084900.01
TGGTTGAATT TGCAATTGCA TGGGAGCTAA AGTAACTCTA GAATCAACCA AACAGTGAAA AAAAAAAGCT AGAGTTTCAC
CATTTGATAC GTGTCATTTG AGAAGCTACG TATGCATGCG TGTCTTCCTT CTCCTTCAGC CACGTGTGTG CCGCACGTGT
CAATGCATGG CCACACCTTG TTTTCCATTT TCACCTGTTG TCAGCTTCTG GTTTTTCCCT CTGATAGCAA TGCATGGACA
TGTGCAACGA AACATAAACT ATATCTCACA TTAGAATAGC GTAGCTCCCT ATATAAACCC TCAACCCTAT CTGTTCTTGT
CACATAGCTT CCAAAACAAA CCTAGTTAAG GATAGAATCG CGTAGTGAGA AAGAATCTGT GCAAGAGTGA GAAAATGACA
AGTCGTCAGC AGAACAAACA AGAGCTTGAT GAGAGAGCAA GGCAGGGAGA GACTGTTGTT CCCGGTGGCA CTGGTGGCAA
GAGCGTTGAG GCTCAGCAAC ACCTTGCTGA AGGAAGAAGC AAGGGAGGGA AAACAAGGAA GGAACAACTA GGGACAGAAG
GGTACCAAGA AATGGGACGC AAGGGTGGGT TGAGCACCAT GGATAAATCA GGAGAAGAAC GTGCTAGAGA GGAAGGCATT
GAAATTGATG AATCCAAGTT CAGGACTTCT TCCAATAACA ACAACGACAT GTAACAGACA CACACACATA AAAAGGTTTT
ACAACAACCT TCGTGTGTGT TCTTATGCTA GCTTCAATGT GAGTTTCGAG TCTTCTCTAG GGAGAATAGA ATAGATTATA
AAGTGTTGTA GTAGGTCAAG GTGTCATGTG TGTCCTGAAA TAAATTAGCT AGCAAGTATG ATGTTTTAGT ATTTTAGGTT
GTTTTAGGTT TCCTTGTACT CGTGTCTCTC TTTTGGGTTG TAAGTGATGA GTGAGGTATA TGTGCCTCCC TTTCACAAGT
GTTGACCAAG TTAATGGAAT GTATATTAAC TACATGTTAT ATTGTCATGA TCCCTTTAGT AACTAAACTT TTATAAATGA
AACTATAATA AAATATTGGC CC

>Vigan.09G084900.01
ATGACAAGTC GTCAGCAGAA CAAACAAGAG CTTGATGAGA GAGCAAGGCA GGGAGAGACT GTTGTTCCCG GTGGCACTGG
TGGCAAGAGC GTTGAGGCTC AGCAACACCT TGCTGAAGGA AGAAGCAAGG GAGGGAAAAC AAGGAAGGAA CAACTAGGGA
CAGAAGGGTA CCAAGAAATG GGACGCAAGG GTGGGTTGAG CACCATGGAT AAATCAGGAG AAGAACGTGC TAGAGAGGAA
GGCATTGAAA TTGATGAATC CAAGTTCAGG ACTTCTTCCA ATAACAACAA CGACATGTAA 

>Vigan.09G084900.01
MTSRQQNKQE LDERARQGET VVPGGTGGKS VEAQQHLAEG RSKGGKTRKE QLGTEGYQEM GRKGGLSTMD KSGEERAREE
GIEIDESKFR TSSNNNNDM*