GBrowse Details

Vigan.09G089200.01

Basic Information:
Name: Vigan.09G089200.01
Multiple alignment
Variant Information
Position: Chr09:12703307..12707647 (+ strand)
Length: 4341
Functional Information:
Description: Similar to Uncharacterized protein. [I1J9N4, Glycine max]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:46.91,30.18,24.94,36.55,38.28,26.36,57.91,26.43
Arabidopsis thaliana homolog: AT2G44610.1
Automatic updates:
Name: BT096359 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-9P13 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:12703307..12703486 (+ strand)
Length: 180
Type: five_prime_UTR
Position: Chr09:12703487..12703603 (+ strand)
Length: 117
Type: CDS
Position: Chr09:12704500..12704570 (+ strand)
Length: 71
Type: CDS
Position: Chr09:12705368..12705456 (+ strand)
Length: 89
Type: CDS
Position: Chr09:12705847..12705958 (+ strand)
Length: 112
Type: CDS
Position: Chr09:12706817..12706907 (+ strand)
Length: 91
Type: CDS
Position: Chr09:12707209..12707352 (+ strand)
Length: 144
Type: CDS
Position: Chr09:12707353..12707647 (+ strand)
Length: 295
Type: three_prime_UTR


>Vigan.09G089200.01
TTTTGGGGTT TCGTCCTCAT CTCATGCGAT TCAATTAAAT AACATTTTCA CATAGCCAAC TCTCTCCGCG TCTTATTGTC
TGTTCCTTTT CTTCAGAGTC CGAGATCAAC CCCGACAAAC CACTGAAGTT TTTCTCTGCT TCTTCCGATT CATCTTTCTG
CTTTCATTTT CGATTTTGAA ATGGCGCCAG TTTCAGCTCT AGCTAAGTAC AAGTTGGTGT TCTTGGGTGA TCAATCGGTG
GGCAAAACCA GCATCATCAC TCGCTTCATG TACGATAAAT TCGATAACAC CTACCAGGCT ACAATTGGTA TTGATTTCCT
ATCAAAAACT ATGTATCTTG AAGATCGAAC AATTCGATTG CAGTTGTGGG ATACAGCTGG CCAGGAAAGG TTTAGAAGTC
TTATTCCAAG CTACATTAGG GACTCATCCG TAGCTGTCAT TGTATATGAT GTTGCAAGCC GACAGAGTTT CCTAAATACA
GCTAAGTGGA TTGAAGAGGT GCGAACAGAG AGAGGCAGTG ATGTCATTAT TGTTCTTGTT GGGAACAAAA CTGATCTTGT
TGAAAAAAGA CAAGTCTCTA TAGAAGAAGG GGAAGCAAAA GCTCGTGAGC TCAATGTCAT GTTCATTGAA ACTAGCGCAA
AGGCTGGGTT TAATATAAAA GCCCTCTTTC GAAAAATTGC TGCAGCATTA CCCGGAATGG AAACACTGTC CTCTGCAAAA
CAAGAAGACA TGGTTGATGT AAACTTGAAG TCTACAACTG GCAACGCTCA AACTCAACCT CAGTCAAGTG GATGCGCATG
TTAATTGTAG TTTGTCATGT GCTGTCCACC TTTTGTTGTG TTTTTGGTTT TATGCAGGTT TTTTTCTGTA GTTTTCTACA
GCATTATATG AAAAAATATG AAAGAATATA TATAAGCAGT GAAGGGTAGG GGTTGGATAT AAGTTCTGTC CAAAAGAATT
ATTGTTTGTT AATTAGATAT GTTTGCCATA ACGTATTATA GGTAACCTCC CCAACCCAAA ATTGGATTTC GTTCAGTGTA
CTTTATAAAT TTAACTTTTT ATTTGGTTTG TCTTGAAAAA AATGTCATTT TATTTTATT

>Vigan.09G089200.01
ATGGCGCCAG TTTCAGCTCT AGCTAAGTAC AAGTTGGTGT TCTTGGGTGA TCAATCGGTG GGCAAAACCA GCATCATCAC
TCGCTTCATG TACGATAAAT TCGATAACAC CTACCAGGCT ACAATTGGTA TTGATTTCCT ATCAAAAACT ATGTATCTTG
AAGATCGAAC AATTCGATTG CAGTTGTGGG ATACAGCTGG CCAGGAAAGG TTTAGAAGTC TTATTCCAAG CTACATTAGG
GACTCATCCG TAGCTGTCAT TGTATATGAT GTTGCAAGCC GACAGAGTTT CCTAAATACA GCTAAGTGGA TTGAAGAGGT
GCGAACAGAG AGAGGCAGTG ATGTCATTAT TGTTCTTGTT GGGAACAAAA CTGATCTTGT TGAAAAAAGA CAAGTCTCTA
TAGAAGAAGG GGAAGCAAAA GCTCGTGAGC TCAATGTCAT GTTCATTGAA ACTAGCGCAA AGGCTGGGTT TAATATAAAA
GCCCTCTTTC GAAAAATTGC TGCAGCATTA CCCGGAATGG AAACACTGTC CTCTGCAAAA CAAGAAGACA TGGTTGATGT
AAACTTGAAG TCTACAACTG GCAACGCTCA AACTCAACCT CAGTCAAGTG GATGCGCATG TTAA

>Vigan.09G089200.01
MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTIRL QLWDTAGQER FRSLIPSYIR
DSSVAVIVYD VASRQSFLNT AKWIEEVRTE RGSDVIIVLV GNKTDLVEKR QVSIEEGEAK ARELNVMFIE TSAKAGFNIK
ALFRKIAAAL PGMETLSSAK QEDMVDVNLK STTGNAQTQP QSSGCAC*