VIGGS:GBrowse

Vigan.09G091000.01

Basic Information:

Name:	Vigan.09G091000.01 Multiple alignment Variant Information
Position:	Chr09:13066627..13069652 (- strand)
Length:	3026

Functional Information:

Description:	Similar to Ferritin-3, chloroplastic. [O65100, Vigna unguiculata]
GO:	Biological Process: iron ion transport (GO:0006826)
	Biological Process: cellular iron ion homeostasis (GO:0006879)
	Molecular Function: ferric iron binding (GO:0008199)
InterPro:	Ferritin (IPR001519)
	Ferritin/DPS protein domain (IPR008331)
	Ferritin- like diiron domain (IPR009040)
	Ferritin-like superfamily (IPR009078)
	Ferritin-related (IPR012347)
	Ferritin, conserved site (IPR014034)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:184.70,19.36,109.60,79.54,20.08,42.99,16.69,16.91

Automatic updates:

Name:	NM_001376042 NCBI(nuccore)
Organism:	Vigna unguiculata
Description:	Vigna unguiculata ferritin-3, chloroplastic (LOC114165968), mRNA; nuclear gene for chloroplast product.
PubMed ID:	9895297 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:13066627..13067030 (- strand)
Length:	404
Type:	three_prime_UTR

Position:	Chr09:13067031..13067210 (- strand)
Length:	180
Type:	CDS

Position:	Chr09:13067351..13067416 (- strand)
Length:	66
Type:	CDS

Position:	Chr09:13067572..13067633 (- strand)
Length:	62
Type:	CDS

Position:	Chr09:13067799..13067886 (- strand)
Length:	88
Type:	CDS

Position:	Chr09:13068293..13068353 (- strand)
Length:	61
Type:	CDS

Position:	Chr09:13068449..13068532 (- strand)
Length:	84
Type:	CDS

Position:	Chr09:13069289..13069596 (- strand)
Length:	308
Type:	CDS

Position:	Chr09:13069597..13069652 (- strand)
Length:	56
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.09G091000.01
AATCACCTCG CCGCAACTGA AATCATCTTC TCCATTTCTC TTCATTTTCC TCCCAAATGG CCCTTTCATG TTCCAAGGTT
TTGACCTTTT CTCTCTCAAA TGGTGTGGGT GGTGATGGTG CTAAGAAGAA GCTAGCCTTT TGTTCTTCTT CTTCTTTGAG
TTTTTCTGTT AATGGTGATG GGAGCAGGAG CATGAGGGTG TGTGCTGCTG CTTCAAACGC ACCGGCACCG CTCACTGGGG
TGATATTTGA ACCTTTTCAG GAGCTGAAAA AGGATTATCT TGCTGTCCCA ATTGCACATA ATGTCTCCTT GGCTCGCCAA
AACTATTCAG ATGAGGCTGA AGCTGCAATC AATGAACAGA TCAATGTGGA ATACAATGTT TCCTATGTGT ATCATTCCTT
GTTTGCCTAC TTCGACAGAG ATAACATAGC TCTCAAGGGA CTTGCCAAGT TCTTCAAGGA ATCAAGTGAA GAAGAAAGAG
AGCATGCTGA AAAGCTTATA AAGTATCAGA ACATTCGTGG TGGACGAGTG GTGCTACATC CCATTTCAAG TCCTCCGTCA
GAATTTGAGC ATACAGAAAA AGGGGATGCC CTATATGCCA TGGAGCTAGC ATTGTCTTTG GAGAAGTTGA CAAATGAGAA
ACTCCTATAT GTTCATAGTG TGGCAGATCG TAACAATGAT GCTCAACTGG CAGACTTCAT TGAGAGTGAG TTTCTGAATG
AGCAGGTTGA ATCAATTAAG AAGATTGCAG AATATGTGAC TCAACTGAGA TTAGTTGGAA AGGGTCATGG TATGCATATA
TTATCTTCAG CTACCGGCAT ATATTTTGTA CTTATTTTTG GTTCACTAAC AAACAAGCAT GTAACTATTA TGCATTATTC
TGTTTACACT CTCCCTCCCT TTTAATGGAA TAAATGCTGT TGTTGCTGCT TCTTGCAGGT GTTTGGCACT TTGATCAGAG
TCTTCTTCAT GATTGAGATG GTGTATAATC CTGGAAGGCT TGTTTTCTGC ATTTGGTCAC ATGTGAAGTT TAGTTGGTGT
TCTATGTTCG TAGGATAGGG AATAATTGTT AGTGTTTCTT GGAGGTGCTA GCAATATGGG ATCTTTTGTA TTATATACTT
GGTGGTAGTG TTACTGTTTT GTGCAATCTC AAAGGTTTGT AGTGTGCTCT TATTTTTTCT AGAAATATAA CAGACGTCCA
TGTGTTCTGG TGAAAGTGTT TGATGCCTCG AAAATTATAC TATTTTTAGT TTTTTTATAT ATACCAAGTA TTTGTACTGA
CCAAGTATTT GTACTGGTCC AACCTGCAG

[show][hide][copy]CDS

>Vigan.09G091000.01
ATGGCCCTTT CATGTTCCAA GGTTTTGACC TTTTCTCTCT CAAATGGTGT GGGTGGTGAT GGTGCTAAGA AGAAGCTAGC
CTTTTGTTCT TCTTCTTCTT TGAGTTTTTC TGTTAATGGT GATGGGAGCA GGAGCATGAG GGTGTGTGCT GCTGCTTCAA
ACGCACCGGC ACCGCTCACT GGGGTGATAT TTGAACCTTT TCAGGAGCTG AAAAAGGATT ATCTTGCTGT CCCAATTGCA
CATAATGTCT CCTTGGCTCG CCAAAACTAT TCAGATGAGG CTGAAGCTGC AATCAATGAA CAGATCAATG TGGAATACAA
TGTTTCCTAT GTGTATCATT CCTTGTTTGC CTACTTCGAC AGAGATAACA TAGCTCTCAA GGGACTTGCC AAGTTCTTCA
AGGAATCAAG TGAAGAAGAA AGAGAGCATG CTGAAAAGCT TATAAAGTAT CAGAACATTC GTGGTGGACG AGTGGTGCTA
CATCCCATTT CAAGTCCTCC GTCAGAATTT GAGCATACAG AAAAAGGGGA TGCCCTATAT GCCATGGAGC TAGCATTGTC
TTTGGAGAAG TTGACAAATG AGAAACTCCT ATATGTTCAT AGTGTGGCAG ATCGTAACAA TGATGCTCAA CTGGCAGACT
TCATTGAGAG TGAGTTTCTG AATGAGCAGG TTGAATCAAT TAAGAAGATT GCAGAATATG TGACTCAACT GAGATTAGTT
GGAAAGGGTC ATGGTATGCA TATATTATCT TCAGCTACCG GCATATATTT TGTACTTATT TTTGGTTCAC TAACAAACAA
GCATGTAACT ATTATGCATT ATTCTGTTTA CACTCTCCCT CCCTTTTAA

[show][hide][copy]PROTEIN

>Vigan.09G091000.01
MALSCSKVLT FSLSNGVGGD GAKKKLAFCS SSSLSFSVNG DGSRSMRVCA AASNAPAPLT GVIFEPFQEL KKDYLAVPIA
HNVSLARQNY SDEAEAAINE QINVEYNVSY VYHSLFAYFD RDNIALKGLA KFFKESSEEE REHAEKLIKY QNIRGGRVVL
HPISSPPSEF EHTEKGDALY AMELALSLEK LTNEKLLYVH SVADRNNDAQ LADFIESEFL NEQVESIKKI AEYVTQLRLV
GKGHGMHILS SATGIYFVLI FGSLTNKHVT IMHYSVYTLP PF*