VIGGS:GBrowse

Vigan.09G091100.01

Basic Information:

Name:	Vigan.09G091100.01 Multiple alignment Variant Information
Position:	Chr09:13100329..13103244 (- strand)
Length:	2916

Functional Information:

Description:	Similar to Uncharacterized protein. [Q9FHW0, Arabidopsis thaliana]
InterPro:	Protein of unknown function DUF538 (IPR007493)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:98.10,23.59,44.73,31.24,74.63,76.76,66.75,33.26
Arabidopsis thaliana homolog:	AT3G08890.1

Automatic updates:

Name:	NM_001250515 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100500143 (LOC100500143), mRNA.
PubMed ID:	18927222 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001251268 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527068 (LOC100527068), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:13100329..13100627 (- strand)
Length:	299
Type:	three_prime_UTR

Position:	Chr09:13100628..13100998 (- strand)
Length:	371
Type:	CDS

Position:	Chr09:13102038..13102092 (- strand)
Length:	55
Type:	CDS

Position:	Chr09:13103034..13103120 (- strand)
Length:	87
Type:	CDS

Position:	Chr09:13103121..13103244 (- strand)
Length:	124
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.09G091100.01
AAGGAGCCAC GTACTTCTTC TCCATCACGT TTGTGTTTTC TCTCTCTTTC TCTTTATCTG AAGGAAGAAG AGAGACAGAG
AGAGAAAGTT CCTCTGGGAT CGAAATCAAA CGTTGTTGAC CGAAATGGAT CAGGTATTCA ACAAGGTCGG ATCCTATTGG
TTCAACCAGA AAGCCACCAG CCAACTCAAT TCCGTCGGTG ACGACATCAA TTCGTTGTCA AACAGTATTG AAGGGGGAAC
CAAATGGTTG GTCAACAAAA TAAAAGGGAA GATGCAAAAG CCATTACCAG AGTTGCTAAA GGAGTATGAT CTACCAATTG
GAATCTTTCC TCGTGATGCA ACAAACTATG AATTCAATGA AGAGACTAGG AAGCTCATCG TTTACATTCC TCAGGTATGT
GAAGTAGGCT ACAAGGATTC ATCAGTCTTG CGTTTCTTCA CCACTGTGAC CTGTTATTTG GAGAAAGGAA AGCTAGCAGA
GATAGAAGGA ATGAAGACAA AAGTGTTGAT CTGGGTGAAA GTGACAACCA TTATGTCAGA GGGATCAAAA CTTTATGTGA
CAGCTGGCAT GAAGAAAACA AGGAGTAGGG AAGCATATGA GTTTACAAGA GATGGTGTAT GCGTAGATAA GTTCTAAAAC
CTTGCATCAT GTTTGTTAAT AGCTTTTACA ATCAGTTAAA TCCCTGTTTG TTCTTGTGGG CTCTTTCTAT CTCTTTTTGC
GTGAATGGTT ATTGTAATTT GCAAGTAGTA TTCAAATATG CACTTCAAAT ATTGCCCTTT TACTTGAACG TTGTAATTTG
GTGCAAGTGA AACGTCCCTT TCGTCCTTGA TCATCTAGGG TATGTTTGGT TTTCTGTCAG GAGATCTCCA ATGACCATTT
AAAAAGTAAA ATTTAAAAAG CCTTTTCAGT GAATTTCAGT TGAGTCCAAT TGTAAA

[show][hide][copy]CDS

>Vigan.09G091100.01
ATGGATCAGG TATTCAACAA GGTCGGATCC TATTGGTTCA ACCAGAAAGC CACCAGCCAA CTCAATTCCG TCGGTGACGA
CATCAATTCG TTGTCAAACA GTATTGAAGG GGGAACCAAA TGGTTGGTCA ACAAAATAAA AGGGAAGATG CAAAAGCCAT
TACCAGAGTT GCTAAAGGAG TATGATCTAC CAATTGGAAT CTTTCCTCGT GATGCAACAA ACTATGAATT CAATGAAGAG
ACTAGGAAGC TCATCGTTTA CATTCCTCAG GTATGTGAAG TAGGCTACAA GGATTCATCA GTCTTGCGTT TCTTCACCAC
TGTGACCTGT TATTTGGAGA AAGGAAAGCT AGCAGAGATA GAAGGAATGA AGACAAAAGT GTTGATCTGG GTGAAAGTGA
CAACCATTAT GTCAGAGGGA TCAAAACTTT ATGTGACAGC TGGCATGAAG AAAACAAGGA GTAGGGAAGC ATATGAGTTT
ACAAGAGATG GTGTATGCGT AGATAAGTTC TAA

[show][hide][copy]PROTEIN

>Vigan.09G091100.01
MDQVFNKVGS YWFNQKATSQ LNSVGDDINS LSNSIEGGTK WLVNKIKGKM QKPLPELLKE YDLPIGIFPR DATNYEFNEE
TRKLIVYIPQ VCEVGYKDSS VLRFFTTVTC YLEKGKLAEI EGMKTKVLIW VKVTTIMSEG SKLYVTAGMK KTRSREAYEF
TRDGVCVDKF *