GBrowse Details

Vigan.09G105500.01

Basic Information:
Name: Vigan.09G105500.01
Multiple alignment
Variant Information
Position: Chr09:15777825..15779492 (+ strand)
Length: 1668
Functional Information:
Description: Similar to uncharacterized protein. [D7SR22, Vitis vinifera]
GO: Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.55,0.07,4.62,1.05,93.91,8.86,2.31,6.83
Automatic updates:
Name: NM_001248975 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500546 (LOC100500546), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249549 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499821 (LOC100499821), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:15777825..15777905 (+ strand)
Length: 81
Type: five_prime_UTR
Position: Chr09:15777906..15777977 (+ strand)
Length: 72
Type: CDS
Position: Chr09:15778103..15778228 (+ strand)
Length: 126
Type: CDS
Position: Chr09:15778408..15778578 (+ strand)
Length: 171
Type: CDS
Position: Chr09:15779070..15779144 (+ strand)
Length: 75
Type: CDS
Position: Chr09:15779145..15779492 (+ strand)
Length: 348
Type: three_prime_UTR


>Vigan.09G105500.01
CAGCCCCTAA GCCTCAGATG GGAAAGAAAA GGCATCAAGA AACCAAAACC CAAAATCAAT CAGAAGAAAG TTGGAAGAAT
CATGGATTCT AGGAGGCGTA GAAATATGCA ACGCAAGTTG CAACAACTTC GATCGGTCAC AAACTCCAGT GCTGTTAACA
AAGCCTCAAT TATTGTGGAT GCCACAAGAT ACATAGAGGA GCTGAAGCAA AAAGTCGATG GATTGAACTC TGAGCTTGCA
ACCGCTGAAT CATCAATCTC CCAAGGCGAA TTACCCATGG TCACTGTAGA AACCCTAGAA AGGGGTTTCC TCATTAATGT
GTTTTCAGAA AGAAATTGTC CCGGCATGCT TGGGGCAATT CTGGACGCGT TTGAAGAACT GGGACTCGAT GTGCTTGATG
CTAGGGTTTC TTGTGAAGAC ACTTTCCAGC TTGAAGCTGT TGGAGGAGAA AGTGAAGAGA AGGAAAACAT CGATGCACAA
GTGGTGAAGC AAGCAGTGAT GCAAGCAATC CAAAACATGG ATTAATCAAA GGAAATTGTT CTAAGAAAGT AGCAGGCTGG
TTCTAAAAAT CTTTGTATTA AATATTAAAA AGTTACGTAT CCTAGTGAGA GAGTTGAAGT TTGATACTAT ATTCTGCCAA
AATGTAAAGT ACCTCTCAAT GACCCTTACA TGTGATGTGG CTTCTTCGTT TGTAGGAAAG AACAAATGGA CAGGGATCGT
CCAGGTTAAT GGGTGTTTTA ATTAGAATTC TAAGAAGTTT GGAAGAAAGG AAGAAAAAAA TAATATTCTT TTTTGGGTTT
CCAAGAAACA CACTCATTGT CAATTTATGT TTATTAAAGT CTATTTAAGT TGTAATCTTC AATAGTTTTA TTA

>Vigan.09G105500.01
ATGGATTCTA GGAGGCGTAG AAATATGCAA CGCAAGTTGC AACAACTTCG ATCGGTCACA AACTCCAGTG CTGTTAACAA
AGCCTCAATT ATTGTGGATG CCACAAGATA CATAGAGGAG CTGAAGCAAA AAGTCGATGG ATTGAACTCT GAGCTTGCAA
CCGCTGAATC ATCAATCTCC CAAGGCGAAT TACCCATGGT CACTGTAGAA ACCCTAGAAA GGGGTTTCCT CATTAATGTG
TTTTCAGAAA GAAATTGTCC CGGCATGCTT GGGGCAATTC TGGACGCGTT TGAAGAACTG GGACTCGATG TGCTTGATGC
TAGGGTTTCT TGTGAAGACA CTTTCCAGCT TGAAGCTGTT GGAGGAGAAA GTGAAGAGAA GGAAAACATC GATGCACAAG
TGGTGAAGCA AGCAGTGATG CAAGCAATCC AAAACATGGA TTAA

>Vigan.09G105500.01
MDSRRRRNMQ RKLQQLRSVT NSSAVNKASI IVDATRYIEE LKQKVDGLNS ELATAESSIS QGELPMVTVE TLERGFLINV
FSERNCPGML GAILDAFEEL GLDVLDARVS CEDTFQLEAV GGESEEKENI DAQVVKQAVM QAIQNMD*