GBrowse Details

Vigan.09G116500.01

Basic Information:
Name: Vigan.09G116500.01
Multiple alignment
Variant Information
Position: Chr09:18541744..18545540 (+ strand)
Length: 3797
Functional Information:
Description: Similar to Uncharacterized protein. [K7K3P5, Glycine max]
GO: Molecular Function: structural molecule activity (GO:0005198)
InterPro: MSP domain (IPR000535)
PapD-like (IPR008962)
Vesicle-associated membrane protein (IPR016763)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:31.02,19.38,41.65,49.26,39.36,38.25,49.98,54.50
Arabidopsis thaliana homolog: AT2G45140.1
Structure :
Position: Chr09:18541744..18541852 (+ strand)
Length: 109
Type: five_prime_UTR
Position: Chr09:18541853..18541904 (+ strand)
Length: 52
Type: CDS
Position: Chr09:18542045..18542115 (+ strand)
Length: 71
Type: CDS
Position: Chr09:18542277..18542358 (+ strand)
Length: 82
Type: CDS
Position: Chr09:18542792..18542907 (+ strand)
Length: 116
Type: CDS
Position: Chr09:18543007..18543171 (+ strand)
Length: 165
Type: CDS
Position: Chr09:18543255..18543305 (+ strand)
Length: 51
Type: CDS
Position: Chr09:18543864..18543941 (+ strand)
Length: 78
Type: CDS
Position: Chr09:18545079..18545195 (+ strand)
Length: 117
Type: CDS
Position: Chr09:18545196..18545540 (+ strand)
Length: 345
Type: three_prime_UTR


>Vigan.09G116500.01
AAAGTGTTGC ACGTTTTTGC TTTCCAAGTT GTGACTCTCT CTACCTACAG CAACCGTTTT CGCTTGCCGG AAACAGACAT
TGATCTCTCT CTCCACCGAT CCCTCCGCCA TGAGTTCCAC CGAGATCCTC CACATACAGC CCCAGGAGCT TCAGTTCCCC
TTTGAATTGA GGAAGCAGAT CTCATGCTCT TTACAGTTGT CTAACAGGAC AGACAACTAT GTGGCTTTCA AGGTTAAGAC
GACAAATCCT AAGAAATACT GTGTTAGACC TAACACTGGA GTTGTGATGC CTAGGTCTAC ATGTGATGTC ATAGTAACAA
TGCAAGCTCA AAAGGAGGCA CCTCCAGAGA TGCAATGCAA GGATAAGTTT CTTCTTCAGA GTGTAGTTGC AAGCCCTGGT
GCAACCACAA AAGATATCAC TCCAGAAATG TTCAATAAAG AATCTGGTCA TGATGTTGAA GAGTGCAAGT TGAGAGTTGT
TTATGTTGCT CCTCCTCAAC CACCATCCCC TGTTAGAGAA GGATCTGATG AAGATTCGTC ACCTCGAGCA TCTGTGTCTG
AAAATGGGCA TTCAAATGCT TTGGACTTTA ATGCGGCTTC AAAAGCTTTC AATGAGCGGG GTGAGCATCA GGACACTTCT
TTTGAGGCAA GAACTCATAT TTCAAAGGTA ACTGAGGAGA GGAATTATGT TATTGAGCAA AACAAAAGAC TTCAGCAAGA
ACTGGAGCTT TTGAGGCGCC AAACCGGCAG TCGGCGCAGC GGCGGTGGCA TACCATTCAT GTACGTAGTT GTTGTTGGCA
TAATTGGCAT CATTCTGGGT TTCCTGTTGA AGAGGACGTG ACCTGAGTGA TTGGTAGCAA TGAGATCAAT TGTAGAAAGC
AACAAGAAAT ATGTGAAATG TGGAAAAACC AAACCAAAAA TTGTTGTCTT ATTGTCGTGC ATTGCTCCTA CAAATTTGGA
ATGTGTGGTC AAAAGTAGGT ACTTGTTCTG AGCCATAGCA ATCATAGACA GTGAACAGAG TTGTATCATG GGAACTGTAA
TTGGTATCTG ATATGCTACA TGTGATTAAT TCTTTAGCAC CATCATAGTG TCCAATATTT TGAACATAAA AAGTCTTCAT
GGTAACACAA AATCATTCTT TACAAGCTTC TTGAAAATGA AAATTTATTT TGTATTTTTG TTAAAA

>Vigan.09G116500.01
ATGAGTTCCA CCGAGATCCT CCACATACAG CCCCAGGAGC TTCAGTTCCC CTTTGAATTG AGGAAGCAGA TCTCATGCTC
TTTACAGTTG TCTAACAGGA CAGACAACTA TGTGGCTTTC AAGGTTAAGA CGACAAATCC TAAGAAATAC TGTGTTAGAC
CTAACACTGG AGTTGTGATG CCTAGGTCTA CATGTGATGT CATAGTAACA ATGCAAGCTC AAAAGGAGGC ACCTCCAGAG
ATGCAATGCA AGGATAAGTT TCTTCTTCAG AGTGTAGTTG CAAGCCCTGG TGCAACCACA AAAGATATCA CTCCAGAAAT
GTTCAATAAA GAATCTGGTC ATGATGTTGA AGAGTGCAAG TTGAGAGTTG TTTATGTTGC TCCTCCTCAA CCACCATCCC
CTGTTAGAGA AGGATCTGAT GAAGATTCGT CACCTCGAGC ATCTGTGTCT GAAAATGGGC ATTCAAATGC TTTGGACTTT
AATGCGGCTT CAAAAGCTTT CAATGAGCGG GGTGAGCATC AGGACACTTC TTTTGAGGCA AGAACTCATA TTTCAAAGGT
AACTGAGGAG AGGAATTATG TTATTGAGCA AAACAAAAGA CTTCAGCAAG AACTGGAGCT TTTGAGGCGC CAAACCGGCA
GTCGGCGCAG CGGCGGTGGC ATACCATTCA TGTACGTAGT TGTTGTTGGC ATAATTGGCA TCATTCTGGG TTTCCTGTTG
AAGAGGACGT GA

>Vigan.09G116500.01
MSSTEILHIQ PQELQFPFEL RKQISCSLQL SNRTDNYVAF KVKTTNPKKY CVRPNTGVVM PRSTCDVIVT MQAQKEAPPE
MQCKDKFLLQ SVVASPGATT KDITPEMFNK ESGHDVEECK LRVVYVAPPQ PPSPVREGSD EDSSPRASVS ENGHSNALDF
NAASKAFNER GEHQDTSFEA RTHISKVTEE RNYVIEQNKR LQQELELLRR QTGSRRSGGG IPFMYVVVVG IIGIILGFLL
KRT*