GBrowse Details

Vigan.09G141900.01

Basic Information:
Name: Vigan.09G141900.01
Multiple alignment
Variant Information
Position: Chr09:27404806..27406899 (+ strand)
Length: 2094
Functional Information:
Description: Similar to Ubiquitin-related modifier 1 homolog. [I1KIJ0, Glycine max]
GO: Biological Process: tRNA thio-modification (GO:0034227)
Cellular Component: cytoplasm (GO:0005737)
InterPro: Beta-grasp domain (IPR012675)
Ubiquitin-related modifier 1 (IPR015221)
Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp (IPR016155)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:87.41,88.38,21.33,30.86,34.00,35.76,40.63,21.58
Arabidopsis thaliana homolog: AT3G61113.1
Automatic updates:
Name: NM_001250166 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306072 (LOC100306072), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:27404806..27404921 (+ strand)
Length: 116
Type: five_prime_UTR
Position: Chr09:27404922..27404944 (+ strand)
Length: 23
Type: CDS
Position: Chr09:27405685..27405760 (+ strand)
Length: 76
Type: CDS
Position: Chr09:27405847..27405929 (+ strand)
Length: 83
Type: CDS
Position: Chr09:27406197..27406314 (+ strand)
Length: 118
Type: CDS
Position: Chr09:27406315..27406899 (+ strand)
Length: 585
Type: three_prime_UTR


>Vigan.09G141900.01
TAGGAATAAA AGTTTAGGGC TTTTGAAGTT TAATTTGAAG AGTTCTCTCT TTCTCTTTCC TCTTTCGATT GTTCCTCTCT
CTAGGGTTTT GGGGGTTCTG AGGATCGTTG TTGAACATGC AGCTGACGCT TGAATTCGGT GGAGGATTGG AACTTCTTTG
TGACTCTAAG AAGATTCATA ATGTCAATAT TGAGCAACAT AATGGAGAAG GCAAGTTAAT CATGAAAGAT TTGCTTTCTT
GGGTACGGAC AAACTTGATT AAGGAGAGGC CTGAGATGTT CATGAAAGGA GACACTGTGA GACCTGGAGT TCTTGTCCTG
GTGAATGACT GTGATTGGGA GCTAAGTGGT CAGCTGGACA CATCACTCGA AGAGAAAGAT GTGGTGGTTT TTATATCAAC
CCTGCATGGT GGTTAGAACA CAGATTTTCT AATGGTTATC ACTTATTGTT AAACATAGTT GTTGAAGTCA TTTGGAACCT
TGATAACTAA AAAGTTTGTG GATGAACAAA CTTACATAGT CTAGTATGCA TAATGTTATT TATAGTCCTT AATTTCACTG
AAATCAAATT TGTATTGCAT TACAGTGTTT AGGCTTTGTT ACGAAAATAG GCAAAAATGG ATCGTATATT ACGAAAATGG
GTAAATTCTA TTCAAAATAC CAAAATGGGG AAGTCATGGG GGGCCAGAAC GACTTTAAAT CAAGAAGTCG TGTCCCACTG
CACGACTTCA CACGGTTCAT TTGACCAGTG GTGAAGTCGT GCACCCCAAA AACGACTTCA GGGTGTTGTA ATCGATTACA
AGATCCTTTA ATCAATTAAA GCGTGTTGAA GTCGTGTCTC CCCTACACGA CTTCACCTTT ATAGGCAAAC ATGGTTCTGG
TAGTCGATTA TAGAAGTGTA GTAATCGATT ACAACGTGTT GAAGTCGTGT CCCCCCTGCA CGACTTCACC TTTGTAGGCA
AAAATGTTTC TGGTAATCGA TTACTACACT TCTGTAATCG A

>Vigan.09G141900.01
ATGCAGCTGA CGCTTGAATT CGGTGGAGGA TTGGAACTTC TTTGTGACTC TAAGAAGATT CATAATGTCA ATATTGAGCA
ACATAATGGA GAAGGCAAGT TAATCATGAA AGATTTGCTT TCTTGGGTAC GGACAAACTT GATTAAGGAG AGGCCTGAGA
TGTTCATGAA AGGAGACACT GTGAGACCTG GAGTTCTTGT CCTGGTGAAT GACTGTGATT GGGAGCTAAG TGGTCAGCTG
GACACATCAC TCGAAGAGAA AGATGTGGTG GTTTTTATAT CAACCCTGCA TGGTGGTTAG 

>Vigan.09G141900.01
MQLTLEFGGG LELLCDSKKI HNVNIEQHNG EGKLIMKDLL SWVRTNLIKE RPEMFMKGDT VRPGVLVLVN DCDWELSGQL
DTSLEEKDVV VFISTLHGG*