GBrowse Details

Vigan.09G148500.01

Basic Information:
Name: Vigan.09G148500.01
Multiple alignment
Variant Information
Position: Chr09:28319951..28322415 (+ strand)
Length: 2465
Functional Information:
Description: Similar to Uncharacterized protein. [I1KIE4, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Short-chain dehydrogenase/reductase SDR (IPR002198)
Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.59,0.86,5.51,67.68,19.78,6.40,15.49,3.18
Automatic updates:
Name: NM_001289301 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max (+)-neomenthol dehydrogenase-like (LOC100801677), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:28319951..28320234 (+ strand)
Length: 284
Type: five_prime_UTR
Position: Chr09:28320235..28320254 (+ strand)
Length: 20
Type: CDS
Position: Chr09:28320364..28320610 (+ strand)
Length: 247
Type: CDS
Position: Chr09:28321054..28321128 (+ strand)
Length: 75
Type: CDS
Position: Chr09:28321532..28321708 (+ strand)
Length: 177
Type: CDS
Position: Chr09:28321894..28322274 (+ strand)
Length: 381
Type: CDS
Position: Chr09:28322275..28322415 (+ strand)
Length: 141
Type: three_prime_UTR


>Vigan.09G148500.01
TTCTTGCAAA TAGTAAATAT TTTATTCTTT TTCTATGAAA TTTATTTTCA ACTTTTTTGT CCTTTTCATT TGGCATGGAA
AGAAGCAAGA CATAATCGAC AAGCACTGTA AAATATTGTA GTTACAGACA CGCCGGCTTG AGCATTGGTA TTCTTAGTAA
TGAATAGGAA ACCATAATTT GTGGAATTCA TATTCAGAGC TCAAAGATAT GCATAAATAA CAACTTGGTA ACCATAACAG
GTTTGTAATA AGCTGCATAC CACAGTTCAG AGTTGAAACT GAAGATGGGG GAAGCTACAG AGAGGTATGC AGTGGTGACA
GGAGCAAATA AAGGGATTGG ATTAGAGATA GTTAGGCAGT TAGCTTCAGA AGGAATAAAG GTGGTACTCA CTGCAAGGAA
TGAAGAGAGG GGTCTTCAAG CATTGGAGAC ACTCAAAGCC TCTGGTCTTT CTCATCTACT GTTGTTTCAT CAGATAGATG
TGGCTCATGC TGCAAGTGTA GCTGCTTTTG CAGATTTTAT CAAATCCAAA TTTGGTAAAC TTGATATTCT GGTTAACAAT
GCGGGAATCA ATGGAGTTGT AATTGAAGAC AGAGACTTAT TCACTACAGT CATCGTGAAT CGTGGGGTGA TACCAGATGA
GGAAGCAACA AGGGCAGTGA CTCAAACATA TGAATTAGCA GAAGAATGCT TGCAAATAAA TTACTATGGC GCTAAAATAA
CTATAGAATC CCTTATGCCC CTCTTGCAAT TATCTGACTC TCCAAGAATT GTGAATGTAT CATCCACTCT CGGGCAATTA
GAGAGTTTCC CTAAAGAATC ATGGGCAAGA GGAGTGTTGA GTGATGGTGA TAAGCTGACA GAAGAGAAAG TGGATGAAAT
AGTGAAGAAA TTTCTAAGTG ATTTCAAAGA AGGTTCATTA GAGAGTAAAG GGTGGCCAAG GTATCTAGGT GCCTATATTG
TGTCGAAAGC TGCTATGAAT GGCTACACGA GAATCCTTGC TAAGAAACAT CCTTCATTCT GCATAAACAG TGTTTGCCCT
GGTTACGTGA AGACAGATAT AACATCAAAC ACTGGTGTTC TAACAGTTGA AGAAGGTGCT GCTAGTCCTG TCAAGCTTGC
ATTGCTTCCC AATGGCTCTC CATCTGGTCT CTTCTATTTC AGAACTGATG TCGCTTCCTT TTGATTTCTA TTTATGCAAT
TTTCTGGTTT GCGGATAAAA CCAGTGATTT TACTTCTCAA TTGTTGAACC TGTTTCAAGC ACATTATATC ATGTTGTATT
AAACTTGTGT TGTTTGTATC TTAAAGTCTA AACTGTGTAT GCAAT

>Vigan.09G148500.01
ATGGGGGAAG CTACAGAGAG GTATGCAGTG GTGACAGGAG CAAATAAAGG GATTGGATTA GAGATAGTTA GGCAGTTAGC
TTCAGAAGGA ATAAAGGTGG TACTCACTGC AAGGAATGAA GAGAGGGGTC TTCAAGCATT GGAGACACTC AAAGCCTCTG
GTCTTTCTCA TCTACTGTTG TTTCATCAGA TAGATGTGGC TCATGCTGCA AGTGTAGCTG CTTTTGCAGA TTTTATCAAA
TCCAAATTTG GTAAACTTGA TATTCTGGTT AACAATGCGG GAATCAATGG AGTTGTAATT GAAGACAGAG ACTTATTCAC
TACAGTCATC GTGAATCGTG GGGTGATACC AGATGAGGAA GCAACAAGGG CAGTGACTCA AACATATGAA TTAGCAGAAG
AATGCTTGCA AATAAATTAC TATGGCGCTA AAATAACTAT AGAATCCCTT ATGCCCCTCT TGCAATTATC TGACTCTCCA
AGAATTGTGA ATGTATCATC CACTCTCGGG CAATTAGAGA GTTTCCCTAA AGAATCATGG GCAAGAGGAG TGTTGAGTGA
TGGTGATAAG CTGACAGAAG AGAAAGTGGA TGAAATAGTG AAGAAATTTC TAAGTGATTT CAAAGAAGGT TCATTAGAGA
GTAAAGGGTG GCCAAGGTAT CTAGGTGCCT ATATTGTGTC GAAAGCTGCT ATGAATGGCT ACACGAGAAT CCTTGCTAAG
AAACATCCTT CATTCTGCAT AAACAGTGTT TGCCCTGGTT ACGTGAAGAC AGATATAACA TCAAACACTG GTGTTCTAAC
AGTTGAAGAA GGTGCTGCTA GTCCTGTCAA GCTTGCATTG CTTCCCAATG GCTCTCCATC TGGTCTCTTC TATTTCAGAA
CTGATGTCGC TTCCTTTTGA 

>Vigan.09G148500.01
MGEATERYAV VTGANKGIGL EIVRQLASEG IKVVLTARNE ERGLQALETL KASGLSHLLL FHQIDVAHAA SVAAFADFIK
SKFGKLDILV NNAGINGVVI EDRDLFTTVI VNRGVIPDEE ATRAVTQTYE LAEECLQINY YGAKITIESL MPLLQLSDSP
RIVNVSSTLG QLESFPKESW ARGVLSDGDK LTEEKVDEIV KKFLSDFKEG SLESKGWPRY LGAYIVSKAA MNGYTRILAK
KHPSFCINSV CPGYVKTDIT SNTGVLTVEE GAASPVKLAL LPNGSPSGLF YFRTDVASF*