GBrowse Details

Vigan.09G148800.01

Basic Information:
Name: Vigan.09G148800.01
Multiple alignment
Variant Information
Position: Chr09:28369087..28371552 (+ strand)
Length: 2466
Functional Information:
Description: Similar to Uncharacterized protein. [I1KIE7, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Short-chain dehydrogenase/reductase SDR (IPR002198)
Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.78,5.87,3.84,10.55,4.60,3.83,31.93,4.82
Automatic updates:
Name: NM_001354728 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max short-chain dehydrogenase/reductase domain-containing protein (LOC111064653), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:28369087..28369177 (+ strand)
Length: 91
Type: five_prime_UTR
Position: Chr09:28369178..28369203 (+ strand)
Length: 26
Type: CDS
Position: Chr09:28369329..28369578 (+ strand)
Length: 250
Type: CDS
Position: Chr09:28370145..28370360 (+ strand)
Length: 216
Type: CDS
Position: Chr09:28370470..28370847 (+ strand)
Length: 378
Type: CDS
Position: Chr09:28370848..28371552 (+ strand)
Length: 705
Type: three_prime_UTR


>Vigan.09G148800.01
TGAGCTTACA TTATTTTATA GCCGTCTTTC ACTTTAAATA TTATCCTCTG CTTTCTGCTT TCTGCATCCA ATTCATTCAG
ATTCAACAAC TATGGGTATG GCAGATGCAA AAGAAAGATA TGCTGTTGTG ACAGGTGCAA ACAAAGGGAT AGGATTGGAG
ACTGTGAAAG GGTTGGCCTC AAATGGAATC AAGGTGGTGC TGACAGCCAG GGATGTGAAG AGGGGTTATC AAGCTGTTGA
GGAATTGCAG AAAGAATTTG GCTTTTCTGG CCTTGTGCTG TTTCACCAGC TTGATGTCAC TGACTCTGCT AGTATTGCAT
CTTTGGTTGA GTTTGTGAAG AACCAGTTTG GGAGACTTGA TATATTGGTG AACAATGCAG GAATCAATGG ATTCAACACA
GATGGCATGG TGCCATCAAA AATTAACTGG AAGGAGCTAC CTCAAACTTG TGAGATGGCT AAGAAATGCC TAAGAACAAA
CTACTATGGT GCTAAGGAAA CAACTGAGGC ATTTCTTCCC CTTCTTCAGT TGTCCAATTT ACCCATGATT GTTAATGTTT
CATCTGAAGC AGGACTTTTA AAGTACATAT CAAATGGATG GGCAAGGAGG GTGCTTGATG ACACAGAAAA TCTGACTGAA
GAGCTAATAG ATGAGGTGCT GAGGGAGTAC ATGAAAGACT TGAAAGCAGG TTGTCTAGAA AACAAAGGGT GGCCAACCTA
CTTGTCTGCA TATATGGTCT CAAAAGCAGC CATGAATTCA TACACAAGGC TTTTAGCCTA TAGATACCCA AAACTGTGCA
TCAATTGTGT CTGTCCTGGT TTTGTTAAGA CAGACATTAA CAAAAACACT GGCATCTTAT CTGTTGAAAA TGGTGCTGCT
AGTGTTGTCA GATTAGCACT CTTGCCTAAT GGTTCCCCTT CTGGCCACTT CTTTACTCGA CAAGAAGTGT CAAGCTTTTG
AAAGCATTTT AAGGTCATGA TTGGATAATT TTTTTCATAA ATACTTGTAA AGAAAAAGTG AAAAAAGTTT CTGCATAAGT
AAAATCAACT TATACATGAG TTGATTTGAA GTAACTGCTA TATCAGTTTG TGAAAGAAAC TTAATTGTTT TTTTTTTCTT
TTGCAAAAAG TATTGGTAAA GAATTTATCC AAACAGGACC TGTTGCTTAC AAATTGCAGA TGGAATGAGA AAAAAATTGA
TAGGAGGTGT TATGTGGCTT GGATTGGATG AAAGTTTTAC CCTTCTAGTC TTCTTTGTGA CATAATATCA TGTGGGGAAA
TGCATCTGAG TTACTTGGTT CTTTTATCTT CTCACATTGT TGGTTCTTCA AATGGTCAAA GTTCAAGTTG CAGTGATTTT
TGGACTGTAT CATATGGCAC GACATGAAAC TTTCGGCAGA GGAAATTATC AACAATGGTC ATTATTATGT CTGTCCCTGT
CATCTTAGGT GTGAATCACA GTGCTCTTGG ACTTCAAACT TTCAACACAC GTGCAATGCT AAAGCACTGC TGATAGTAAA
GCAGCAATAA TGGATGTCGA GATTTCAGAA AAAGACGACT ATTGTAACAC GACATACCAT CATTCGTGTC CATCTTCTGT
AACATAATAT TATTATCTGT AATATATCAG TGGATCTTAT CAAACGTTAA TCCATGCTCA AATCAG

>Vigan.09G148800.01
ATGGGTATGG CAGATGCAAA AGAAAGATAT GCTGTTGTGA CAGGTGCAAA CAAAGGGATA GGATTGGAGA CTGTGAAAGG
GTTGGCCTCA AATGGAATCA AGGTGGTGCT GACAGCCAGG GATGTGAAGA GGGGTTATCA AGCTGTTGAG GAATTGCAGA
AAGAATTTGG CTTTTCTGGC CTTGTGCTGT TTCACCAGCT TGATGTCACT GACTCTGCTA GTATTGCATC TTTGGTTGAG
TTTGTGAAGA ACCAGTTTGG GAGACTTGAT ATATTGGTGA ACAATGCAGG AATCAATGGA TTCAACACAG ATGGCATGGT
GCCATCAAAA ATTAACTGGA AGGAGCTACC TCAAACTTGT GAGATGGCTA AGAAATGCCT AAGAACAAAC TACTATGGTG
CTAAGGAAAC AACTGAGGCA TTTCTTCCCC TTCTTCAGTT GTCCAATTTA CCCATGATTG TTAATGTTTC ATCTGAAGCA
GGACTTTTAA AGTACATATC AAATGGATGG GCAAGGAGGG TGCTTGATGA CACAGAAAAT CTGACTGAAG AGCTAATAGA
TGAGGTGCTG AGGGAGTACA TGAAAGACTT GAAAGCAGGT TGTCTAGAAA ACAAAGGGTG GCCAACCTAC TTGTCTGCAT
ATATGGTCTC AAAAGCAGCC ATGAATTCAT ACACAAGGCT TTTAGCCTAT AGATACCCAA AACTGTGCAT CAATTGTGTC
TGTCCTGGTT TTGTTAAGAC AGACATTAAC AAAAACACTG GCATCTTATC TGTTGAAAAT GGTGCTGCTA GTGTTGTCAG
ATTAGCACTC TTGCCTAATG GTTCCCCTTC TGGCCACTTC TTTACTCGAC AAGAAGTGTC AAGCTTTTGA 

>Vigan.09G148800.01
MGMADAKERY AVVTGANKGI GLETVKGLAS NGIKVVLTAR DVKRGYQAVE ELQKEFGFSG LVLFHQLDVT DSASIASLVE
FVKNQFGRLD ILVNNAGING FNTDGMVPSK INWKELPQTC EMAKKCLRTN YYGAKETTEA FLPLLQLSNL PMIVNVSSEA
GLLKYISNGW ARRVLDDTEN LTEELIDEVL REYMKDLKAG CLENKGWPTY LSAYMVSKAA MNSYTRLLAY RYPKLCINCV
CPGFVKTDIN KNTGILSVEN GAASVVRLAL LPNGSPSGHF FTRQEVSSF*