GBrowse Details

Vigan.09G149700.01

Basic Information:
Name: Vigan.09G149700.01
Multiple alignment
Variant Information
Position: Chr09:28455537..28457505 (+ strand)
Length: 1969
Functional Information:
Description: Similar to (+)-neomenthol dehydrogenase. [G7KA55, Medicago truncatula]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Short-chain dehydrogenase/reductase SDR (IPR002198)
Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Short-chain dehydrogenase/reductase, conserved site (IPR020904)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.09,0.05,12.23,26.81,6.36,22.36,1.31,18.96
Automatic updates:
Name: NM_001255090 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max short-chain dehydrogenase/reductase domain-containing protein (LOC100803877), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:28455537..28455571 (+ strand)
Length: 35
Type: five_prime_UTR
Position: Chr09:28455572..28455798 (+ strand)
Length: 227
Type: CDS
Position: Chr09:28455915..28456161 (+ strand)
Length: 247
Type: CDS
Position: Chr09:28456271..28456336 (+ strand)
Length: 66
Type: CDS
Position: Chr09:28456640..28456819 (+ strand)
Length: 180
Type: CDS
Position: Chr09:28457000..28457377 (+ strand)
Length: 378
Type: CDS
Position: Chr09:28457378..28457505 (+ strand)
Length: 128
Type: three_prime_UTR


>Vigan.09G149700.01
AAGACAAGGT TCGAAGTGAA AACACAAAAT AAGATATGAG AGGACACTTC TTTGTGCTGA AACCAACCAA AAATGTGGGC
CATAACACTG AATCTCATAG AACCTATCGT GAATTTTTCG TTCAACACAA AGTTCAAAAG CATTTAATCA TTTGGCCATT
AGCACAGTTG TTCAAAATCA TTTATCAGCA GCTCGTTTTC GACCACTATT TTTTCATCAG CTACTTCCCT CGTTCAAGTG
TAATGGCAGA AACAACAAAA GGGTATGCTG TTGTGACGGG AGCAAATAAG GGAATTGGAT TCGCAATATG CAAGCAATTG
GCTTCAAATG GGTTCACTGT GGTGCTCACA GCCAGAGATG AGAAGAGGGG TGTTGAAGCT GTTGAGAAAC TCAAAGAACT
TGGTCTCCCT GGCCATGTGG TTTTTCATCA ACTTGATGTT ACTGATCCCA AAAGTATAAC ATCGCTGGCA GATTTCATCA
AAACCCAGTA TGGGAAACTG GATATCTTGG TAAACAATGC TGGAATTCCT GGAGCACATG TGGACGGTGA GGCTTTGTCT
GCTGCTGGCA TTATGGAAAA TGCTGGTCGT GTTGATTGGA GTAAAATAGT GACTGAAACC TATGAATTAG CTGAAGCAGG
TCTTAAAACA AACTACTATG GAGTCAAGGA ATTAACCAAA ACACTTATTC CCCTTCTTCA GTTTTCAAGC TCTCCAAGAA
TTGTGAATGT TTCCTCATCC ATGGGAAAGC TTGAGAATAT GAAGGATGGA AGACCTAAAG AAGTACTTAG TGATGCTGAA
AACCTTACAG AAGAAAAGAT TGATGAGATT TTGGATGAAT TTTTGAAGGC CTTTAAAGAG GGTTCACTAG AAAGCAAAGG
TTGGCCTCAG GCAATGTCTG CATATAGTGT CTCAAAAGCT GCTCTTAATG CCTACACAAG GATTCTGGCA AAGAAGTATC
CCTCATTCTG CATCAATGCT GTTTGTCCAG GCTATGTGAA AACAGATATA AACTACAATA CAGGTTTTCT CACACCTGAT
GAAGGTGCTG AAGCTGCAGT GAGATTGGCA CTGCTACCAG ATGGTAGCCC TTCTGGCCTT TTTTTCTTTA GAAGTGAAGA
GAAACCATTT TGATCATGAA TTGTTCCTCC AAAACCAGAA TAAATTATGG GTAATACATG AAGTCATGGT TGTTATTACA
CTTTCAAAAA CTTCTTCACA TTAGTTTTTG ATAGAAATGC TTTAACTTAG TTTTTGCACT A

>Vigan.09G149700.01
ATGAGAGGAC ACTTCTTTGT GCTGAAACCA ACCAAAAATG TGGGCCATAA CACTGAATCT CATAGAACCT ATCGTGAATT
TTTCGTTCAA CACAAAGTTC AAAAGCATTT AATCATTTGG CCATTAGCAC AGTTGTTCAA AATCATTTAT CAGCAGCTCG
TTTTCGACCA CTATTTTTTC ATCAGCTACT TCCCTCGTTC AAGTGTAATG GCAGAAACAA CAAAAGGGTA TGCTGTTGTG
ACGGGAGCAA ATAAGGGAAT TGGATTCGCA ATATGCAAGC AATTGGCTTC AAATGGGTTC ACTGTGGTGC TCACAGCCAG
AGATGAGAAG AGGGGTGTTG AAGCTGTTGA GAAACTCAAA GAACTTGGTC TCCCTGGCCA TGTGGTTTTT CATCAACTTG
ATGTTACTGA TCCCAAAAGT ATAACATCGC TGGCAGATTT CATCAAAACC CAGTATGGGA AACTGGATAT CTTGGTAAAC
AATGCTGGAA TTCCTGGAGC ACATGTGGAC GGTGAGGCTT TGTCTGCTGC TGGCATTATG GAAAATGCTG GTCGTGTTGA
TTGGAGTAAA ATAGTGACTG AAACCTATGA ATTAGCTGAA GCAGGTCTTA AAACAAACTA CTATGGAGTC AAGGAATTAA
CCAAAACACT TATTCCCCTT CTTCAGTTTT CAAGCTCTCC AAGAATTGTG AATGTTTCCT CATCCATGGG AAAGCTTGAG
AATATGAAGG ATGGAAGACC TAAAGAAGTA CTTAGTGATG CTGAAAACCT TACAGAAGAA AAGATTGATG AGATTTTGGA
TGAATTTTTG AAGGCCTTTA AAGAGGGTTC ACTAGAAAGC AAAGGTTGGC CTCAGGCAAT GTCTGCATAT AGTGTCTCAA
AAGCTGCTCT TAATGCCTAC ACAAGGATTC TGGCAAAGAA GTATCCCTCA TTCTGCATCA ATGCTGTTTG TCCAGGCTAT
GTGAAAACAG ATATAAACTA CAATACAGGT TTTCTCACAC CTGATGAAGG TGCTGAAGCT GCAGTGAGAT TGGCACTGCT
ACCAGATGGT AGCCCTTCTG GCCTTTTTTT CTTTAGAAGT GAAGAGAAAC CATTTTGA

>Vigan.09G149700.01
MRGHFFVLKP TKNVGHNTES HRTYREFFVQ HKVQKHLIIW PLAQLFKIIY QQLVFDHYFF ISYFPRSSVM AETTKGYAVV
TGANKGIGFA ICKQLASNGF TVVLTARDEK RGVEAVEKLK ELGLPGHVVF HQLDVTDPKS ITSLADFIKT QYGKLDILVN
NAGIPGAHVD GEALSAAGIM ENAGRVDWSK IVTETYELAE AGLKTNYYGV KELTKTLIPL LQFSSSPRIV NVSSSMGKLE
NMKDGRPKEV LSDAENLTEE KIDEILDEFL KAFKEGSLES KGWPQAMSAY SVSKAALNAY TRILAKKYPS FCINAVCPGY
VKTDINYNTG FLTPDEGAEA AVRLALLPDG SPSGLFFFRS EEKPF*