GBrowse Details

Vigan.09G151000.01

Basic Information:
Name: Vigan.09G151000.01
Multiple alignment
Variant Information
Position: Chr09:28654836..28656659 (- strand)
Length: 1824
Functional Information:
Description: Similar to Uncharacterized protein. [I1JKA9, Glycine max]
InterPro: Ribosomal protein S27/S33, mitochondrial (IPR013219)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.41,25.08,21.16,18.02,35.38,71.72,33.54,17.17
Arabidopsis thaliana homolog: AT5G44710.1
Automatic updates:
Name: NM_001361205 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 28S ribosomal protein S33, mitochondrial-like (LOC100775975), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Name: NM_001361206 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 28S ribosomal protein S33, mitochondrial-like (LOC100801934), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr09:28654836..28655150 (- strand)
Length: 315
Type: three_prime_UTR
Position: Chr09:28655151..28655241 (- strand)
Length: 91
Type: CDS
Position: Chr09:28656282..28656562 (- strand)
Length: 281
Type: CDS
Position: Chr09:28656563..28656659 (- strand)
Length: 97
Type: five_prime_UTR


>Vigan.09G151000.01
GTCTGGGTAG CATAATACAT GAATTTCATA ATTTAAAAAA ACAGGGACAT TATTGGAAAT ACAAATATTT GAGGGGTTAA
AATGTGATTA CAACAAAATG ATCTCACTAA ACCGCTTGGC CTCCATCTCA TTCCTTTTGA GTGGCAGAGC GACTCAGAAA
ACAACGAAGA TGGCTTTGAA GAAGATGTTG GCTGCAGCGA TCAATCAAGG AGTGCCGGAA GCACGAGCAA GGATCTTCGG
CCACCAATTG AATCCCTCTG GCAAGAAATC TCCACACAAG ATTCTCCGCA TGAAGCTCTT CGGTGAAAAA GTCGCTCAGT
GGTACCCTCA CGACATCAAT AAAGACGACC CTCTTGTCAT GGCTCGTCAA GAACAAGAAC GTCTATCCAA GCTTGAAATG
TTGAAGCGGC GAGGGAAAGG ACCACCAAAG AAGGGCCAAG GAAGGCGTGC TGCCAAACGC AACAAATAAA TGAAACTTTC
ACCAGTCACT GGAATCTTGT TGTGGACAGT CTTTTGAGTT AAAGACAACT AGTAGTTCAT GTGATAACAC CATTTAACTT
TTGTTATCAG ATTGTAAACC CAAGCATTTG AGAATTGAAA CCTAATTTGG TTGAAGTCTG TGTCCTCTAT TTGCAATTAG
TTTTTCCGGA ATTGCTTGCA AGCTGGAATG CAACCATAAG ATTACAAAGT AGCCACTTTC TTATTGACTT TGATATTATA
TCCTATCTCA TCTTTATCGC ATTTTATGGG TTGTGAGAAA TTCATTATTA ACATCTTCTT CCAC

>Vigan.09G151000.01
ATGATCTCAC TAAACCGCTT GGCCTCCATC TCATTCCTTT TGAGTGGCAG AGCGACTCAG AAAACAACGA AGATGGCTTT
GAAGAAGATG TTGGCTGCAG CGATCAATCA AGGAGTGCCG GAAGCACGAG CAAGGATCTT CGGCCACCAA TTGAATCCCT
CTGGCAAGAA ATCTCCACAC AAGATTCTCC GCATGAAGCT CTTCGGTGAA AAAGTCGCTC AGTGGTACCC TCACGACATC
AATAAAGACG ACCCTCTTGT CATGGCTCGT CAAGAACAAG AACGTCTATC CAAGCTTGAA ATGTTGAAGC GGCGAGGGAA
AGGACCACCA AAGAAGGGCC AAGGAAGGCG TGCTGCCAAA CGCAACAAAT AA

>Vigan.09G151000.01
MISLNRLASI SFLLSGRATQ KTTKMALKKM LAAAINQGVP EARARIFGHQ LNPSGKKSPH KILRMKLFGE KVAQWYPHDI
NKDDPLVMAR QEQERLSKLE MLKRRGKGPP KKGQGRRAAK RNK*