VIGGS:GBrowse

Vigan.09G159300.01

Basic Information:

Name:	Vigan.09G159300.01 Multiple alignment Variant Information
Position:	Chr09:29908977..29912391 (- strand)
Length:	3415

Functional Information:

Description:	Similar to Uncharacterized protein. [I1MKS0, Glycine max]
GO:	Biological Process: biosynthetic process (GO:0009058)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: pyridoxal phosphate binding (GO:0030170)
InterPro:	Aminotransferases, class-I, pyridoxal-phosphate-binding site (IPR004838)
	Aminotransferase, class I/classII (IPR004839)
	Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421)
	Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (IPR015422)
	Pyridoxal phosphate-dependent transferase (IPR015424)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.43,0.00,0.00,0.09,0.00,0.29
Arabidopsis thaliana homolog:	AT1G01480.1, AT3G61510.1, AT4G11280.1

Automatic updates:

Name:	BT091354 NCBI(nuccore)
Organism:	Glycine max
Description:	Soybean clone JCVI-FLGm-25A10 unknown mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:29908977..29909183 (- strand)
Length:	207
Type:	three_prime_UTR

Position:	Chr09:29909184..29910159 (- strand)
Length:	976
Type:	CDS

Position:	Chr09:29911590..29911750 (- strand)
Length:	161
Type:	CDS

Position:	Chr09:29911895..29912026 (- strand)
Length:	132
Type:	CDS

Position:	Chr09:29912136..29912303 (- strand)
Length:	168
Type:	CDS

Position:	Chr09:29912304..29912391 (- strand)
Length:	88
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.09G159300.01
CCTAGCTATA GCACCATCCA AATTCCAAAG CCTTGCAGCT CAAACTAGAT TCTTACCATA CACCTTCTGC ATAAATTATA
ACATTAACAT GGACTCAGGG AGAATGAGCC AACAACTTCT ATCCAAAATT GCCACCAATG ACAAACATGG AGAGAATTCT
CCATACTTTG ATGGCTGGAA AGCATATGAG AGAAACCCTT TTCACCCTAC AAAAAATCCT CAAGGTGTTA TTCAGATGGG
TCTTGCAGAA AATCAACTGT GCTTTGATCT GATTGAAGAC TGGATTCTGA ATCATCCCGA AGCTTCCATT TGCACTCCTG
AGGGAGTGCA TCAGTTCAGA AACATTGCCA ACTTTCAGGA CTATCATGGA CTGCAACAGT TCAGAAATGC TATTGCAAAC
TGGATGTCAA AAGTGAGAGG AGGTAGGGTC AGATTTGATC CAGACCGTAT ATTGATGAGT GGAGGAGCAA CAGGGGCCAA
CGAGCAAATC ATGTTCTGCT TGGCTGATCC TGGAGATGCC TTTATGATTC CTACCCCATT TTATCCAGGA TTCGTTCGTG
ACTTGTGTTG GAGAACCCAG GTGCAGTTGA TTCCTGTCCA CTGCCATAGC TCCAACGACT TCAAGATAAC AAGAGAAGCT
CTTGAAGAAG CTTACAAAAA AGCCAAAGAG GACAACATCA ACGTTAAGGG GTTGATCATA ACAAACCCCT CTAACCCTTT
GGGCACAACC TTGGACAGGG ACACGTTGAA GAGCCTAGTG AGCTTCATCA ACGAGAAAAA CATTCACTTG GTCTGTGATG
AAATCTACGC AGCAACTGTG TTCAGTAGTT CCCCCAGTTA TGTAAGCGTG GCTGAAGTGA TTCAAGAAAT GGAACATTGC
AAACGCGAAC TGATTCATGT CATTTATAGT TTGTCCAAAG ACATGGGGTT CCCTGGTTTC AGAGTTGGCA TAGTTTATTC
ATTCAACGAT GAAGTGGTGG CATGTGCTAG GAAAATGTCT AGCTTCGGCT TAGTCTCCTC GCAAACTCAA CACATGCTGG
CTTCCATGCT TTCCGATGAA AAGTTTGTGA CGAAGTTTCT TTCAGAGAAT TCAAGAAGGT TGGAGGAGAG GCACGAGAAG
TTCATGAAGG GGCTTGAAGA GGTTAACATT GTTCGGTTTC CAAGCAGCGC AGGACTTTTC TTCTGGATGA ACTTGAAGAG
TTTATTGGAG GAAGCAACGT TTGAAGCTGA GCTGAAGCTA TGGCGTGTGA TCATTCACGA GGTGAAGCTG AATGTGTCAC
CAGGGTCTTC TTTCAACTGT TCTGAGCCTG GTTGGTTTAG GGTTTGCTTT GCCAACATGG ATGATGAAAC AGTGGAGATT
GCACTGAACA GGATTCGTGA ACTGGTGGGG AAAGAAACAA AGAAACCAGT GGGAATGAAA CGTTGGCAAC CGAATCTTAG
ACTCAGTTTT TCTTCGAGGC GGTTTGATGA GAGTGCTATG TCTCCTCATT CACCTATTAC ATCACCTCTT GTTCAAGCCA
CTTGAATATT CAACAAGGGT TCTGCATCAA CATCTATCGT TTTCAAGAAC TTTGATGATA CGGTCTCAGT CTGAAAATAT
TTTAATAATT TTGTTTTTTT GTTTTGCTAA TTAGGTTTGC TTTCCTAATG TTCTGGAGGG TGCTTAGGGT ATTTTCACGT
TTAGGTTGTC CCAAAGGGCT AACTGTGAGA TAGCTAGGGT GACTGAAATT AT

[show][hide][copy]CDS

>Vigan.09G159300.01
ATGGACTCAG GGAGAATGAG CCAACAACTT CTATCCAAAA TTGCCACCAA TGACAAACAT GGAGAGAATT CTCCATACTT
TGATGGCTGG AAAGCATATG AGAGAAACCC TTTTCACCCT ACAAAAAATC CTCAAGGTGT TATTCAGATG GGTCTTGCAG
AAAATCAACT GTGCTTTGAT CTGATTGAAG ACTGGATTCT GAATCATCCC GAAGCTTCCA TTTGCACTCC TGAGGGAGTG
CATCAGTTCA GAAACATTGC CAACTTTCAG GACTATCATG GACTGCAACA GTTCAGAAAT GCTATTGCAA ACTGGATGTC
AAAAGTGAGA GGAGGTAGGG TCAGATTTGA TCCAGACCGT ATATTGATGA GTGGAGGAGC AACAGGGGCC AACGAGCAAA
TCATGTTCTG CTTGGCTGAT CCTGGAGATG CCTTTATGAT TCCTACCCCA TTTTATCCAG GATTCGTTCG TGACTTGTGT
TGGAGAACCC AGGTGCAGTT GATTCCTGTC CACTGCCATA GCTCCAACGA CTTCAAGATA ACAAGAGAAG CTCTTGAAGA
AGCTTACAAA AAAGCCAAAG AGGACAACAT CAACGTTAAG GGGTTGATCA TAACAAACCC CTCTAACCCT TTGGGCACAA
CCTTGGACAG GGACACGTTG AAGAGCCTAG TGAGCTTCAT CAACGAGAAA AACATTCACT TGGTCTGTGA TGAAATCTAC
GCAGCAACTG TGTTCAGTAG TTCCCCCAGT TATGTAAGCG TGGCTGAAGT GATTCAAGAA ATGGAACATT GCAAACGCGA
ACTGATTCAT GTCATTTATA GTTTGTCCAA AGACATGGGG TTCCCTGGTT TCAGAGTTGG CATAGTTTAT TCATTCAACG
ATGAAGTGGT GGCATGTGCT AGGAAAATGT CTAGCTTCGG CTTAGTCTCC TCGCAAACTC AACACATGCT GGCTTCCATG
CTTTCCGATG AAAAGTTTGT GACGAAGTTT CTTTCAGAGA ATTCAAGAAG GTTGGAGGAG AGGCACGAGA AGTTCATGAA
GGGGCTTGAA GAGGTTAACA TTGTTCGGTT TCCAAGCAGC GCAGGACTTT TCTTCTGGAT GAACTTGAAG AGTTTATTGG
AGGAAGCAAC GTTTGAAGCT GAGCTGAAGC TATGGCGTGT GATCATTCAC GAGGTGAAGC TGAATGTGTC ACCAGGGTCT
TCTTTCAACT GTTCTGAGCC TGGTTGGTTT AGGGTTTGCT TTGCCAACAT GGATGATGAA ACAGTGGAGA TTGCACTGAA
CAGGATTCGT GAACTGGTGG GGAAAGAAAC AAAGAAACCA GTGGGAATGA AACGTTGGCA ACCGAATCTT AGACTCAGTT
TTTCTTCGAG GCGGTTTGAT GAGAGTGCTA TGTCTCCTCA TTCACCTATT ACATCACCTC TTGTTCAAGC CACTTGA

[show][hide][copy]PROTEIN

>Vigan.09G159300.01
MDSGRMSQQL LSKIATNDKH GENSPYFDGW KAYERNPFHP TKNPQGVIQM GLAENQLCFD LIEDWILNHP EASICTPEGV
HQFRNIANFQ DYHGLQQFRN AIANWMSKVR GGRVRFDPDR ILMSGGATGA NEQIMFCLAD PGDAFMIPTP FYPGFVRDLC
WRTQVQLIPV HCHSSNDFKI TREALEEAYK KAKEDNINVK GLIITNPSNP LGTTLDRDTL KSLVSFINEK NIHLVCDEIY
AATVFSSSPS YVSVAEVIQE MEHCKRELIH VIYSLSKDMG FPGFRVGIVY SFNDEVVACA RKMSSFGLVS SQTQHMLASM
LSDEKFVTKF LSENSRRLEE RHEKFMKGLE EVNIVRFPSS AGLFFWMNLK SLLEEATFEA ELKLWRVIIH EVKLNVSPGS
SFNCSEPGWF RVCFANMDDE TVEIALNRIR ELVGKETKKP VGMKRWQPNL RLSFSSRRFD ESAMSPHSPI TSPLVQAT*