VIGGS:GBrowse

Vigan.09G160700.01

Basic Information:

Name:	Vigan.09G160700.01 Multiple alignment Variant Information
Position:	Chr09:30124297..30126158 (+ strand)
Length:	1862

Functional Information:

Description:	Similar to Uncharacterized protein. [Q9XER5, Glycine max]
GO:	Biological Process: response to desiccation (GO:0009269)
InterPro:	Late embryogenesis abundant protein, LEA-14 (IPR004864)
	Immunoglobulin-like fold (IPR013783)
	Water stress and hypersensitive response domain (IPR013990)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:8601.59,1886.27,0.46,0.93,0.44,541.57,0.91,0.34

Automatic updates:

Name:	NM_001251006 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max seed maturation protein PM22 (PM22), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:30124297..30124453 (+ strand)
Length:	157
Type:	five_prime_UTR

Position:	Chr09:30124454..30124659 (+ strand)
Length:	206
Type:	CDS

Position:	Chr09:30125661..30125913 (+ strand)
Length:	253
Type:	CDS

Position:	Chr09:30125914..30126158 (+ strand)
Length:	245
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.09G160700.01
GCGACACGTA CTGGTAAGAA ACACACGTGT CAGTAGCAGA TCCTCGTACT GGCATACTAG GACAGGGATT TCACTTAGGT
GTTCTTATAT AAATTGGTTA TGCATCAGTT ACGTTCTTCA GAGTTCCAGT ATTAAGAGTA TTGTTGCAAA GTAAAAAATG
TCGCAGTTGT TGAATAAAGC GAAGAACTTC GTGTCGGAGA AGGTAAACGA GATGGCGAAG CCTGAGGCGA GTGTGAGCGA
TGTGGACTTC AAGCGCGTGA GCAAAGATAG CATGGAATAC TTGGTGAAGG TAGCTGTTCG TAACCCTTAT TCAACTCCCA
TACCCATATG TGAGATCAGA TACTCTTTCA AAAGCGCGTC AAGGGAGATA GCATCAGGGA CAATTCCAGA CCCAGGATCT
TTGAAGTCAA AGGACACGAC CATGGTGGAT GTGCCAGTTA AGGTTCCATA CAGCATATTA ATGTCCTTAG CAAGGGACAT
TGGTGCCGAC TGGGACATCG ACTACCAACT CGACATTCGT CTCATTATTG ACCTTCCTGT CATTGGCAAC TTCACCATTC
CTCTCTCTCA CAGCGGAGAG ATCAAGCTTC CAACCCTCTC TACCATGTTT GCCTAAGCCT TCCTTCCAAC ACCATCATTT
CCTTTCCTTT TATATGTATC TTTCCACCCT TTTGCATCTT CCTCAAACTA TATATGTACA TCGTCTTATA ATAAAACCAC
TCTTCATATG TATGCTTGTA AACTTCATAA ACGTATGCTC GTCTTTCTTT TATGCCATTA AGTATTAGTT GTATGACTTT
TTTATGGGAC TGAGTGTATT ACTTGTTGTT TTATAAATCT TTTTCTGAAA GATAATGCTA T

[show][hide][copy]CDS

>Vigan.09G160700.01
ATGTCGCAGT TGTTGAATAA AGCGAAGAAC TTCGTGTCGG AGAAGGTAAA CGAGATGGCG AAGCCTGAGG CGAGTGTGAG
CGATGTGGAC TTCAAGCGCG TGAGCAAAGA TAGCATGGAA TACTTGGTGA AGGTAGCTGT TCGTAACCCT TATTCAACTC
CCATACCCAT ATGTGAGATC AGATACTCTT TCAAAAGCGC GTCAAGGGAG ATAGCATCAG GGACAATTCC AGACCCAGGA
TCTTTGAAGT CAAAGGACAC GACCATGGTG GATGTGCCAG TTAAGGTTCC ATACAGCATA TTAATGTCCT TAGCAAGGGA
CATTGGTGCC GACTGGGACA TCGACTACCA ACTCGACATT CGTCTCATTA TTGACCTTCC TGTCATTGGC AACTTCACCA
TTCCTCTCTC TCACAGCGGA GAGATCAAGC TTCCAACCCT CTCTACCATG TTTGCCTAA

[show][hide][copy]PROTEIN

>Vigan.09G160700.01
MSQLLNKAKN FVSEKVNEMA KPEASVSDVD FKRVSKDSME YLVKVAVRNP YSTPIPICEI RYSFKSASRE IASGTIPDPG
SLKSKDTTMV DVPVKVPYSI LMSLARDIGA DWDIDYQLDI RLIIDLPVIG NFTIPLSHSG EIKLPTLSTM FA*