GBrowse Details

Vigan.09G164400.01

Basic Information:
Name: Vigan.09G164400.01
Multiple alignment
Variant Information
Position: Chr09:30579620..30582210 (+ strand)
Length: 2591
Functional Information:
Description: Similar to Uncharacterized protein. [I1MKN8, Glycine max]
InterPro: Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain (IPR025564)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:215.51,109.71,150.31,1241.00,18.47,177.05,50.91,183.43
Arabidopsis thaliana homolog: AT4G01150.1
Automatic updates:
Name: NM_001250437 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max CAAD domain-containing protein (LOC100305578), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr09:30579620..30579785 (+ strand)
Length: 166
Type: five_prime_UTR
Position: Chr09:30579786..30579939 (+ strand)
Length: 154
Type: CDS
Position: Chr09:30580929..30581023 (+ strand)
Length: 95
Type: CDS
Position: Chr09:30581198..30581305 (+ strand)
Length: 108
Type: CDS
Position: Chr09:30581440..30581511 (+ strand)
Length: 72
Type: CDS
Position: Chr09:30581811..30581876 (+ strand)
Length: 66
Type: CDS
Position: Chr09:30581877..30582210 (+ strand)
Length: 334
Type: three_prime_UTR


>Vigan.09G164400.01
ACATGTTCTT CTCTACTTTC TTTATTTTTT TTTATAAAAA TAAATATCTA TTGAATTTGA ATAGGAAGAA AGTGAGACCA
ACCAAAGTGC CAATTTCTTG GTTTGGGGAT AGATAGAGTG ATACCCATCA CACTGTTCAT ATTTCTCATA TTAATTAATA
ATAATAATGG CAGCGGCGGC GGCGGCAGTG ACGGTGCTAC TACCACCTAG GATTCCGACC ACCACCAACG TTACCCGCTG
TTCTGCTTTG CCTTCTCTGC CTCCACGTGT AACCAGCACC AGCACCACCT TGTTCTCACC TTCCCTCAAC CACTTTTCAG
TGTCCCGAAA ATCTTTTCTG CTTCAGACCA GAGCTTCTTC AGAGGAATCA TCCTCAGTAG ATGCCAATGA GTTGTTCACA
GATTTGAAGG AAAAGTGGGA TGCTGTTGAA AACAAGTCCA CAGTGCTTAT CTATGGTGGT GGGGCTTTAG TTGCTGTTTG
GCTATCTTCC ATTCTCGTGA GCGCAATCAA CTCAGTTCCC TTGCTTCCAA AGATCATGGA GTTGGTAGGT CTAGGATACA
CTGGATGGTT TGTCTACCGA TACCTTCTGT TCAAGTCTAG CAGGAAGGAG CTAGCTACAG ACATTGAAGG ACTGAAGAAG
AAAATCACTG GAACTGAATA GAATGGTGTT AGCAAGTACC AAGTGAAGTT TATCTTCTGT GAGCACCATT TGTTTTTGTT
TGCTCTTATC TGCTGTATAA GTATGTATCC CGTGAAGTAG AATAGAATTC CTCTCAACCT CTATTGCCCC TGTAATGAAC
CCATTTCATT GTTAAAATAA TGTAGCAAAT TTTATGTATA TGGCTCTGAA TGGAACCATT ATCTTTCCAC TTCTTTCCTG
TGTAAGAAAT TTAAGTGATA TATGAGTATA GAAGGAGGAA TTATATCATA TATGGGACCA GTTGTTTCTG TGTCTAGACC
ATGATAGATT AAAGATCTAC TACCAGTTTA AAGCA

>Vigan.09G164400.01
ATGGCAGCGG CGGCGGCGGC AGTGACGGTG CTACTACCAC CTAGGATTCC GACCACCACC AACGTTACCC GCTGTTCTGC
TTTGCCTTCT CTGCCTCCAC GTGTAACCAG CACCAGCACC ACCTTGTTCT CACCTTCCCT CAACCACTTT TCAGTGTCCC
GAAAATCTTT TCTGCTTCAG ACCAGAGCTT CTTCAGAGGA ATCATCCTCA GTAGATGCCA ATGAGTTGTT CACAGATTTG
AAGGAAAAGT GGGATGCTGT TGAAAACAAG TCCACAGTGC TTATCTATGG TGGTGGGGCT TTAGTTGCTG TTTGGCTATC
TTCCATTCTC GTGAGCGCAA TCAACTCAGT TCCCTTGCTT CCAAAGATCA TGGAGTTGGT AGGTCTAGGA TACACTGGAT
GGTTTGTCTA CCGATACCTT CTGTTCAAGT CTAGCAGGAA GGAGCTAGCT ACAGACATTG AAGGACTGAA GAAGAAAATC
ACTGGAACTG AATAG

>Vigan.09G164400.01
MAAAAAAVTV LLPPRIPTTT NVTRCSALPS LPPRVTSTST TLFSPSLNHF SVSRKSFLLQ TRASSEESSS VDANELFTDL
KEKWDAVENK STVLIYGGGA LVAVWLSSIL VSAINSVPLL PKIMELVGLG YTGWFVYRYL LFKSSRKELA TDIEGLKKKI
TGTE*