GBrowse Details

Vigan.09G165700.01

Basic Information:
Name: Vigan.09G165700.01
Multiple alignment
Variant Information
Position: Chr09:30743606..30745804 (+ strand)
Length: 2199
Functional Information:
Description: Similar to Glyceraldehyde-3-phosphate dehydrogenase A. [XP_007049484.1, Theobroma cacao]
InterPro: Protein of unknown function DUF2996 (IPR021374)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.52,0.53,15.71,339.14,0.09,10.15,0.32,30.09
Automatic updates:
Name: NM_001249242 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305492 (LOC100305492), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:30743606..30743881 (+ strand)
Length: 276
Type: five_prime_UTR
Position: Chr09:30743882..30744031 (+ strand)
Length: 150
Type: CDS
Position: Chr09:30744234..30744315 (+ strand)
Length: 82
Type: CDS
Position: Chr09:30744446..30744633 (+ strand)
Length: 188
Type: CDS
Position: Chr09:30745179..30745248 (+ strand)
Length: 70
Type: CDS
Position: Chr09:30745469..30745623 (+ strand)
Length: 155
Type: CDS
Position: Chr09:30745624..30745804 (+ strand)
Length: 181
Type: three_prime_UTR


>Vigan.09G165700.01
TAGTTTTGTA GTCTAGTGTT CCCAGTTTAT GTGTTTATTT ATTTATTATT CTTAAATAGA TAGATAGAAG AAAAGGCTTC
AAAATCAGTG GTACATATTG TCCCAAGACC GTGTGGATCA GAAACTTCTC TCATTTTGTT CCTCCCACGC ATATTTCTGA
CTAAAACCAT TAACAAACCA CTGAAAGAAA AAAAAATGGT TGGTGACTAA ACAGAAAAAA AAGAAGAGAA GAAAAGAAAA
GTAAAAGAAC ACAATCAAAG CATCAAGAGA GAAAGAATGC AAATGGCAAC TTTGTTAAGA GGTGGAGCAC TTGGTGATTC
TAGCTTTCGT TTGTGTTCAT TACCATCAAC TTCTTCTTTG CATGTCTCTC AGAATGTTGC CATACCCACC TCATCATCAT
CATCATCATC ACCAATACTA CCTTTGATTG CAAGTAAATA TAAAACATCC AGCAGAAACA GAATCACCTG CTCTGCTGTT
CAAGAGTCGT CTCCTAGCAC AACAGCAGCT ACTGCTGAAA CAAAAGAGGA GGTAAAGGAA GCTCCAAAAG CTGCACCGGC
AAAAAAACCT CCAGCTAAAG CACCTGTTAA GCCTCTACCT CAGATGATGG AGGAGGATGT GATCCCTTCC CTGAAAGATA
TATTTGAAGC CCAAGAAGAT TTATCAAACA TTGAGCTAGT CTTTAAGGAT AATAGGTTAG AAGGTTCTCT TTTGAAGAAA
GGCAACCCCT ACTCATTTTG GGCCTTCTTT CCCACAGGAC TCATTGGTCC AAAGGGGTTT TCTCTGTCAT CGTATAACGG
AGGAGCAAGC ACTGTTGAGC CATTTCTTGT TGATGAAAAG AAGGTCACAG CAAAACACAT AATCTTTTGG GTGGAAAAAC
GTTTGGCAGC ACAGGGGATT CTTCCTATAT GGAAAGATTA ATCTCTAAAA GATGAAATTA TAGTTTGGTT GCTAATGATG
TGTAGCATAC AATTCAATAT TCTCTTGTTC CTTTCATTAA TGACTGGTAT ACAAAATGAT AATGTTCATC AATGCGTCAC
TGCACACATG TTCATGATAA GAATGACTTT AATTTGATTA GTTCTCTACT AATGTGTTAA AA

>Vigan.09G165700.01
ATGCAAATGG CAACTTTGTT AAGAGGTGGA GCACTTGGTG ATTCTAGCTT TCGTTTGTGT TCATTACCAT CAACTTCTTC
TTTGCATGTC TCTCAGAATG TTGCCATACC CACCTCATCA TCATCATCAT CATCACCAAT ACTACCTTTG ATTGCAAGTA
AATATAAAAC ATCCAGCAGA AACAGAATCA CCTGCTCTGC TGTTCAAGAG TCGTCTCCTA GCACAACAGC AGCTACTGCT
GAAACAAAAG AGGAGGTAAA GGAAGCTCCA AAAGCTGCAC CGGCAAAAAA ACCTCCAGCT AAAGCACCTG TTAAGCCTCT
ACCTCAGATG ATGGAGGAGG ATGTGATCCC TTCCCTGAAA GATATATTTG AAGCCCAAGA AGATTTATCA AACATTGAGC
TAGTCTTTAA GGATAATAGG TTAGAAGGTT CTCTTTTGAA GAAAGGCAAC CCCTACTCAT TTTGGGCCTT CTTTCCCACA
GGACTCATTG GTCCAAAGGG GTTTTCTCTG TCATCGTATA ACGGAGGAGC AAGCACTGTT GAGCCATTTC TTGTTGATGA
AAAGAAGGTC ACAGCAAAAC ACATAATCTT TTGGGTGGAA AAACGTTTGG CAGCACAGGG GATTCTTCCT ATATGGAAAG
ATTAA

>Vigan.09G165700.01
MQMATLLRGG ALGDSSFRLC SLPSTSSLHV SQNVAIPTSS SSSSSPILPL IASKYKTSSR NRITCSAVQE SSPSTTAATA
ETKEEVKEAP KAAPAKKPPA KAPVKPLPQM MEEDVIPSLK DIFEAQEDLS NIELVFKDNR LEGSLLKKGN PYSFWAFFPT
GLIGPKGFSL SSYNGGASTV EPFLVDEKKV TAKHIIFWVE KRLAAQGILP IWKD*