VIGGS:GBrowse

Vigan.09G166600.01

Basic Information:

Name:	Vigan.09G166600.01 Multiple alignment Variant Information
Position:	Chr09:30787657..30789649 (- strand)
Length:	1993

Functional Information:

Description:	Similar to serine acetyltransferase 5-like. [XP_004510733.1, Cicer arietinum]
GO:	Biological Process: cysteine biosynthetic process from serine (GO:0006535)
	Cellular Component: cytoplasm (GO:0005737)
	Molecular Function: serine O-acetyltransferase activity (GO:0009001)
	Molecular Function: transferase activity (GO:0016740)
InterPro:	Bacterial transferase hexapeptide repeat (IPR001451)
	Serine O-acetyltransferase (IPR005881)
	Serine acetyltransferase, N-terminal (IPR010493)
	Trimeric LpxA-like (IPR011004)
	Hexapeptide transferase, conserved site (IPR018357)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:23.14,20.81,23.21,35.68,62.59,70.97,51.29,33.22
Arabidopsis thaliana homolog:	AT5G56760.1

Automatic updates:

Name:	NM_001248711 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max serine acetyltransferase (LOC547632), mRNA.
PubMed ID:	14586654 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:30787657..30788103 (- strand)
Length:	447
Type:	three_prime_UTR

Position:	Chr09:30788104..30788595 (- strand)
Length:	492
Type:	CDS

Position:	Chr09:30789072..30789440 (- strand)
Length:	369
Type:	CDS

Position:	Chr09:30789441..30789649 (- strand)
Length:	209
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.09G166600.01
ACAGGATTGC ATTAGGAAAC ATCAAGCGAA GAACAAAGGA ATATGAATGC TTTTGATTCG TGAATACCCA ACGAAGGAGT
GAATGGTTGT CTTGTCCCTC TTCGTTTCTT GGATCTTAAT CTTGTTTCTC ACAGTACCAC ACTTTTTTCA CAGCTTCTCA
ACCGCACAAA CCCCAACGCC AAACCATAAT CGCAACACAT CACCAAACAA TGCCGACGGG GCTACCGGCG GCGAACACCG
TCGTCTCGAG CGACGACGAG GGCTGGGTGT GGGCTCAGAT CAAGGCGGAG GCGCGCCGCG ACGCCGAGTC GGAGCCGGCG
CTGGCGAGCT ACCTGTACTC GACGATCCTC TCGCACTCCT CGCTCGAACG TTCTCTCTCG TTCCACCTGG GTAACAAGCT
CTGTTCTTCT ACGCTACTAT CCACTCTCCT CTACGACCTC TTCCTCAACG CCTTCTCCTC CGACCCCTCG CTCAGTTCCG
CCGCCGTCGC GGACCTCCGC GCTGCCCGCG AACGTGACCC TGCCTGCGTT TCCTACTCTC ACTGTCTTCT CAATTACAAA
GGCTTCCTCG CCTGCCAGGC GCACCGTGTG GCACACCTGT TGTGGCGGCA ATCGCGGCGG CCGTTGGCAT TGGCACTGCA
CTCTCGGATT GCTGATGTGT TTGCGGTGGA TATTCACCCG GCGGCGAGGA TTGGGAAGGG GATTCTGTTT GATCATGCCA
CTGGGGTGGT GGTGGGGGAG ACAGCGGTGA TTGGGAACAA TGTATCCATT CTGCACCATG TCACGCTGGG CGGGACTGGC
AAGGTTGGTG GTGACAGGCA TCCCAAGATT GGGGATGGGG TGCTTATTGG CGCTGGTGCT ACAATTCTGG GAAATATCAA
GATTGGGGAA GGTGCAAAGG TTGGTGCCGG CTCGGTGGTT TTGATTGATG TGCCGCCAAG GACCACCGCA GTTGGGAACC
CGGCGAGGTT GGTTGGTGGG AAGGAGACAC CCTCTAAGCA TGAGGATGTG CCTGGGGAGT CCATGGACCA TACTTCCTTT
ATCTCTGAGT GGTCAGATTA TATCATTTGA ATTTCCAAGG TTAATCAATT AATTAATGAA TACTCCAAAT GAAATACTAT
GTTGTGCTGT TCTAAAGTTT TGTAATTTTT TTATGTTTGG ATTGAGATTT TGTACTCTAC ACTCTGTGCA AAGTGAAACT
GTAATCGGGT CAAATAAAGG TTTGATGAGC AGCTGTATGA AAAATTTGAT CACTGCTTAG TATACTGTAT GTATTATGAG
TTGAAGTTTT GGCTTGCTTG TTTGGTTATT GTACCAGGAC TCAGTTGTAA GCCCTAAATT TTCGTATCAT TTCCCGTTGT
ATATGCTCAA GGATTATACT ATACGATGGT ATTTATGCAG TTATTGATAT TTCCTATTAC TGAAGTTTCA TAACAGAGGA
GACAGTCATT AGTTTTCTTC TTAGTGTTGT CTTGACGCTC TCAACTTGTG CATGTGTTCT CTATGTTTGA CAAAAAA

[show][hide][copy]CDS

>Vigan.09G166600.01
ATGCCGACGG GGCTACCGGC GGCGAACACC GTCGTCTCGA GCGACGACGA GGGCTGGGTG TGGGCTCAGA TCAAGGCGGA
GGCGCGCCGC GACGCCGAGT CGGAGCCGGC GCTGGCGAGC TACCTGTACT CGACGATCCT CTCGCACTCC TCGCTCGAAC
GTTCTCTCTC GTTCCACCTG GGTAACAAGC TCTGTTCTTC TACGCTACTA TCCACTCTCC TCTACGACCT CTTCCTCAAC
GCCTTCTCCT CCGACCCCTC GCTCAGTTCC GCCGCCGTCG CGGACCTCCG CGCTGCCCGC GAACGTGACC CTGCCTGCGT
TTCCTACTCT CACTGTCTTC TCAATTACAA AGGCTTCCTC GCCTGCCAGG CGCACCGTGT GGCACACCTG TTGTGGCGGC
AATCGCGGCG GCCGTTGGCA TTGGCACTGC ACTCTCGGAT TGCTGATGTG TTTGCGGTGG ATATTCACCC GGCGGCGAGG
ATTGGGAAGG GGATTCTGTT TGATCATGCC ACTGGGGTGG TGGTGGGGGA GACAGCGGTG ATTGGGAACA ATGTATCCAT
TCTGCACCAT GTCACGCTGG GCGGGACTGG CAAGGTTGGT GGTGACAGGC ATCCCAAGAT TGGGGATGGG GTGCTTATTG
GCGCTGGTGC TACAATTCTG GGAAATATCA AGATTGGGGA AGGTGCAAAG GTTGGTGCCG GCTCGGTGGT TTTGATTGAT
GTGCCGCCAA GGACCACCGC AGTTGGGAAC CCGGCGAGGT TGGTTGGTGG GAAGGAGACA CCCTCTAAGC ATGAGGATGT
GCCTGGGGAG TCCATGGACC ATACTTCCTT TATCTCTGAG TGGTCAGATT ATATCATTTG A

[show][hide][copy]PROTEIN

>Vigan.09G166600.01
MPTGLPAANT VVSSDDEGWV WAQIKAEARR DAESEPALAS YLYSTILSHS SLERSLSFHL GNKLCSSTLL STLLYDLFLN
AFSSDPSLSS AAVADLRAAR ERDPACVSYS HCLLNYKGFL ACQAHRVAHL LWRQSRRPLA LALHSRIADV FAVDIHPAAR
IGKGILFDHA TGVVVGETAV IGNNVSILHH VTLGGTGKVG GDRHPKIGDG VLIGAGATIL GNIKIGEGAK VGAGSVVLID
VPPRTTAVGN PARLVGGKET PSKHEDVPGE SMDHTSFISE WSDYII*