GBrowse Details

Vigan.09G168200.01

Basic Information:
Name: Vigan.09G168200.01
Multiple alignment
Variant Information
Position: Chr09:31016241..31020423 (+ strand)
Length: 4183
Functional Information:
Description: Similar to Uncharacterized protein. [I1MKL4, Glycine max]
InterPro: PMR5 N-terminal domain (IPR025846)
PC-Esterase (IPR026057)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.62,4.09,2.58,8.32,2.85,4.94,3.09,18.53
Arabidopsis thaliana homolog: AT1G01430.1
Automatic updates:
Name: NM_001248360 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PMR5N/PC-Estrase domain-containing protein (LOC100305942), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:31016241..31016808 (+ strand)
Length: 568
Type: five_prime_UTR
Position: Chr09:31016809..31017082 (+ strand)
Length: 274
Type: CDS
Position: Chr09:31017834..31018111 (+ strand)
Length: 278
Type: CDS
Position: Chr09:31019158..31019925 (+ strand)
Length: 768
Type: CDS
Position: Chr09:31019926..31020423 (+ strand)
Length: 498
Type: three_prime_UTR


>Vigan.09G168200.01
TTCCATTATG CTGTGCATGA GAGAGAAAGA AAGAGTGAGT GACATGTTTG CTAATAAATC ATAGTTACAA ATTATGTGAA
TGAATTTATT TTACCAAAAG TAGAATGCAA AATTCACCAA ATCATAGTTT TTTAAGGTAA AAATCTTTGA ACATCACACG
TGCAGATGGA TGAAAAGATG AGCATTCTGT TAGACAGTGA GACCAAATGA CACACATTCT TCTCTATCAA AGGAAATGCT
CTAATCACTC GAGACTTACA CACACACTGA ACGTGTTTCT CATCGTGAAA AGTTGTTGTT TTTATATATA TATTTGTTTT
TTTTAAATGA TATTATCTAT TTTGGTTTTA TTTTCACCAT TAATGGCTGC CACATGGTAC ATGTCACGTA ATGTGTTTTT
GTATCAACAT ACATTATTAT CCCAACAAAG GGTGTGCAGA AAACAGGTTC GTTTATTCAA TATCATAACT TGCTTCCATT
TCCTATAATA ATTACTCAGC AGCACCGTTT CATGAGAAAG TAGCAAAGTT GGTTGTGGCT GTGGTTTCAT CTTTGCATCT
GATACAAGAT GGTGAAGAGA GTGAGGTCTG ATTCGGGACC ACTGTCCCTG CAAAAGAACA ACCATGTGTG TGTCAAGTTA
GCACTCTCAA TTTTCTTGGT GGGTCTCGCT GTTCGTCTTC TCTTGTGGGA TTCATTCAGT TTCTTCTCAG TGGTGGAGTC
ACCTTCTGTG GAAGATGCAA AAGCAGAGTC CCCTGTTTTA CCTTCATCTG ATCTTCAGGC TTCTGATTCT GATGACTTTC
CGGAAACTCA TCATCAGAAT CAGACTCAAA TCTCTAAGGA TGAAAAATGT GATCTTTTTG TGGGAGAATG GGTGCCAGAC
CAATCTGGGC CTGTGTACAC TAATGAGAGC TGCCGTGTGA TTGAGCCTCA TCAAAATTGT ATGAAGAATG GACGTCCTGA
TTCAGGGTAC CTGTACTGGA GGTGGAGTCC AAGAGACTGT AAATTGCCCA AGTTCAATCC CAAGAAGTTT CTTAAGTTTA
TGAGAAATAA ATCATTGGCT TTCATTGGTG ATTCAATCTC TCGTAATCAT GTTCAGTCCC TACTTTGCAT TCTCTCAAAG
GTGGAACCTG CTGTTGAAAT TTACCATGAC AAGGAATATA GATCAAAGAT ATGGAAATTT CGCTCTCATA ACTTCACACT
CTCAGTAATC TGGACCCCTT TCCTTGTTAA AGCAGCTATA TTTGAGGATA TGAATGGAGT TACCTCATCA GAGATACAAC
TTTATATTGA CACTCTAGAT AAGTGGACCA ACCAATATAA GAACTTTGAC TATGTTGTCA TTGGTGGTGG AAAATGGTTT
CTCAAGACTG CAATATACCA TGAAAACAAC ACAGTAACCG GCTGCCACTA CTGCCCTGGA AAGAACTTAA CAGAGCTGGG
ATTTGACTAT GCTTACCGCA AAGTACTACA AGAAGTTTTC AAGTTCTTCA CAAACTCTAA ACACAAGGCC ACTGTTCTCT
TCAGAACCAC CACACCTGAT CACTTTGAGA ATGGGGAGTG GTTTAGTGGA GGGTACTGCA ATAGAACTGT ACCCTTCAAG
GAGGGTCAGA TTCATATGAT AGATGTGGAT TCCATCATGA GAGGTATTGA ACTTGAAGAG TTTGAGAAGG CTGCTTCCCT
AGGATCTCAA AGGGTGAACT TGCAACTTTT GGACACAACA CTCCTTTCAT TGCTGAGACC AGATGGGCAT CCAGGACCTT
ACAGGAAGTT CCAGCCATTT GCAAAAGACA AGAATGCTAA AGTTCAAAAC GATTGTCTAC ATTGGTGTTT GCCCGGACCA
ATTGACTCAT GGAATGACAT AATAATGCAA ATGCTACTCA ATGCCTAATA AATAACAAGC TATCACCAGA TCATTAAGGT
TTGAAGCTGG TTACAAATAT GATCATTTTA AATTCAGGAT TCTTTGTTGC ATGGTAGTTT CTCAATACCA TTAGTAGTTT
GCAAAAAGGA TGTTTTATAC ACAAAGGCAT TAGGTTGAAC TCCGCTCTGT ACATGGGACT GTATAGCTTA ATAAAAGCTA
GCAAGACACA AATGTAAACC GTAGCACTCA ATATAAACTC ATCTTATGTC CTTTTCATAT AATTTTTGTG AGGAATATAT
ACCTATTTTC TTCTATACTT AGATGTAGAA ATAAAGTCTC AGGATTGAGT AGTGCTGAAG GAGCTGTGCT TAGTAAGCTG
CAGAGAGACC AGTCCAAATT TCAATTTCAT GTATTAAGCT TTTTAAAGCC CTTGATACGT TTCATATATG TGTACATAAA
ACATGTATAC GAAATGACAT TTTTGTTTAA GGCATCAATA AATCATCCAC ACTTGTTGCC TCCCCG

>Vigan.09G168200.01
ATGGTGAAGA GAGTGAGGTC TGATTCGGGA CCACTGTCCC TGCAAAAGAA CAACCATGTG TGTGTCAAGT TAGCACTCTC
AATTTTCTTG GTGGGTCTCG CTGTTCGTCT TCTCTTGTGG GATTCATTCA GTTTCTTCTC AGTGGTGGAG TCACCTTCTG
TGGAAGATGC AAAAGCAGAG TCCCCTGTTT TACCTTCATC TGATCTTCAG GCTTCTGATT CTGATGACTT TCCGGAAACT
CATCATCAGA ATCAGACTCA AATCTCTAAG GATGAAAAAT GTGATCTTTT TGTGGGAGAA TGGGTGCCAG ACCAATCTGG
GCCTGTGTAC ACTAATGAGA GCTGCCGTGT GATTGAGCCT CATCAAAATT GTATGAAGAA TGGACGTCCT GATTCAGGGT
ACCTGTACTG GAGGTGGAGT CCAAGAGACT GTAAATTGCC CAAGTTCAAT CCCAAGAAGT TTCTTAAGTT TATGAGAAAT
AAATCATTGG CTTTCATTGG TGATTCAATC TCTCGTAATC ATGTTCAGTC CCTACTTTGC ATTCTCTCAA AGGTGGAACC
TGCTGTTGAA ATTTACCATG ACAAGGAATA TAGATCAAAG ATATGGAAAT TTCGCTCTCA TAACTTCACA CTCTCAGTAA
TCTGGACCCC TTTCCTTGTT AAAGCAGCTA TATTTGAGGA TATGAATGGA GTTACCTCAT CAGAGATACA ACTTTATATT
GACACTCTAG ATAAGTGGAC CAACCAATAT AAGAACTTTG ACTATGTTGT CATTGGTGGT GGAAAATGGT TTCTCAAGAC
TGCAATATAC CATGAAAACA ACACAGTAAC CGGCTGCCAC TACTGCCCTG GAAAGAACTT AACAGAGCTG GGATTTGACT
ATGCTTACCG CAAAGTACTA CAAGAAGTTT TCAAGTTCTT CACAAACTCT AAACACAAGG CCACTGTTCT CTTCAGAACC
ACCACACCTG ATCACTTTGA GAATGGGGAG TGGTTTAGTG GAGGGTACTG CAATAGAACT GTACCCTTCA AGGAGGGTCA
GATTCATATG ATAGATGTGG ATTCCATCAT GAGAGGTATT GAACTTGAAG AGTTTGAGAA GGCTGCTTCC CTAGGATCTC
AAAGGGTGAA CTTGCAACTT TTGGACACAA CACTCCTTTC ATTGCTGAGA CCAGATGGGC ATCCAGGACC TTACAGGAAG
TTCCAGCCAT TTGCAAAAGA CAAGAATGCT AAAGTTCAAA ACGATTGTCT ACATTGGTGT TTGCCCGGAC CAATTGACTC
ATGGAATGAC ATAATAATGC AAATGCTACT CAATGCCTAA 

>Vigan.09G168200.01
MVKRVRSDSG PLSLQKNNHV CVKLALSIFL VGLAVRLLLW DSFSFFSVVE SPSVEDAKAE SPVLPSSDLQ ASDSDDFPET
HHQNQTQISK DEKCDLFVGE WVPDQSGPVY TNESCRVIEP HQNCMKNGRP DSGYLYWRWS PRDCKLPKFN PKKFLKFMRN
KSLAFIGDSI SRNHVQSLLC ILSKVEPAVE IYHDKEYRSK IWKFRSHNFT LSVIWTPFLV KAAIFEDMNG VTSSEIQLYI
DTLDKWTNQY KNFDYVVIGG GKWFLKTAIY HENNTVTGCH YCPGKNLTEL GFDYAYRKVL QEVFKFFTNS KHKATVLFRT
TTPDHFENGE WFSGGYCNRT VPFKEGQIHM IDVDSIMRGI ELEEFEKAAS LGSQRVNLQL LDTTLLSLLR PDGHPGPYRK
FQPFAKDKNA KVQNDCLHWC LPGPIDSWND IIMQMLLNA*