GBrowse Details

Vigan.09G169100.01

Basic Information:
Name: Vigan.09G169100.01
Multiple alignment
Variant Information
Position: Chr09:31089861..31093325 (- strand)
Length: 3465
Functional Information:
Description: Similar to Pathogenesis-induced protein. [B5LNQ2, Arachis hypogaea]
InterPro: Polyketide cyclase/dehydrase (IPR019587)
START-like domain (IPR023393)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:397.22,337.91,36.46,109.80,34.27,85.57,145.81,81.62
Arabidopsis thaliana homolog: AT1G01360.1
Automatic updates:
Name: NM_001249399 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500065 (LOC100500065), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:31089861..31090160 (- strand)
Length: 300
Type: three_prime_UTR
Position: Chr09:31090161..31090376 (- strand)
Length: 216
Type: CDS
Position: Chr09:31090763..31090978 (- strand)
Length: 216
Type: CDS
Position: Chr09:31092930..31093055 (- strand)
Length: 126
Type: CDS
Position: Chr09:31093056..31093325 (- strand)
Length: 270
Type: five_prime_UTR


>Vigan.09G169100.01
AAACAATATA ATAAAACATT GTCGGTGGAT TCATGGATTT TTGATGTACT GCCAAGCTAA GCTAAGGTTG ACACTTTTTT
ACACCAACTC TTCTCTCTTT CTATCTCTCT GTACAAGCTT AAGCTTATCT CTCCCCCACC CCACTTGTTG CCTCTGCCCT
ATGTTATAGC CAAAAGGGTG AGAGAGAAAG AAACACAAAC AACAAGCATC GAGAGAAACT AGAGAGAGAA AGAAGTTGAG
TGAGTTTAGA GAGATAGATA AGAGAAGAAG ATGATGAACG GTGACTCTCG CAGTGCTCTT GAGGCACAGT ACATAAGGAG
ACATCACAAA CATGAACTAA GGGAAAACCA GTGCACTTCT GCTCTTGTTA AACACATCAA AGCCCCTGTT CACCTTGTGT
GGTCGCTGGT TAGAAGATTT GATCAACCCC AGAAATATAA ACCATTTGTT AGCAGATGTA TCATGCAAGG AGACCTTGGC
ATTGGAAGTG TTAGAGAAGT GAATGTTAAA TCTGGCCTTC CAGCCACAAC AAGTACTGAG AGGTTGGAAC AACTTGATGA
TGAGGAGCAC ATTCTTGGCA TTAGGATTGT TGGAGGTGAC CATAGGCTGA GGAACTATTC TTCCATAATA ACAGTGCATC
CAGAGGTGAT TGAGGGAAGA CCTGGAACAA TGGTGATTGA ATCATTTGTG GTGGATGTGC CTGATGGAAA CACTAAGGAT
GAAACTTGCT ACTTTGTGGA GGCTTTGATC AGGTGTAACC TAAGCTCTCT TGCTGATGTC TCAGAGAGGA TGGCAGTTCA
AGGCCGAACC GATCCCATCA ACCATTAAGC ATGTCTGGGG GAGAATGAAG TTGGTTCATG ATCCATTGCT CTCTGATCTA
GTTCCAGTGT GAACATTGGT TGGAGTATTC CTTCCATGTT CCCAGAAGTT TTGGAAGTTT TTCCTCTGTA TCATGGATAC
AATTCCCCTA CCATCTCTCA CAAGTTTTGT AAGATGAGAT TCTGAGCCTC ATATGGGGAT GGTTGGGGAA AGTTTTTTAC
CTGCTCTTTT CTTCCTGGAT TTTGTGAATG GTGGTTTGTT ACTACAGTTG TCTGTAAATA TTTTCGTTGA GACAAAACCA
GTTTCTGC

>Vigan.09G169100.01
ATGATGAACG GTGACTCTCG CAGTGCTCTT GAGGCACAGT ACATAAGGAG ACATCACAAA CATGAACTAA GGGAAAACCA
GTGCACTTCT GCTCTTGTTA AACACATCAA AGCCCCTGTT CACCTTGTGT GGTCGCTGGT TAGAAGATTT GATCAACCCC
AGAAATATAA ACCATTTGTT AGCAGATGTA TCATGCAAGG AGACCTTGGC ATTGGAAGTG TTAGAGAAGT GAATGTTAAA
TCTGGCCTTC CAGCCACAAC AAGTACTGAG AGGTTGGAAC AACTTGATGA TGAGGAGCAC ATTCTTGGCA TTAGGATTGT
TGGAGGTGAC CATAGGCTGA GGAACTATTC TTCCATAATA ACAGTGCATC CAGAGGTGAT TGAGGGAAGA CCTGGAACAA
TGGTGATTGA ATCATTTGTG GTGGATGTGC CTGATGGAAA CACTAAGGAT GAAACTTGCT ACTTTGTGGA GGCTTTGATC
AGGTGTAACC TAAGCTCTCT TGCTGATGTC TCAGAGAGGA TGGCAGTTCA AGGCCGAACC GATCCCATCA ACCATTAA

>Vigan.09G169100.01
MMNGDSRSAL EAQYIRRHHK HELRENQCTS ALVKHIKAPV HLVWSLVRRF DQPQKYKPFV SRCIMQGDLG IGSVREVNVK
SGLPATTSTE RLEQLDDEEH ILGIRIVGGD HRLRNYSSII TVHPEVIEGR PGTMVIESFV VDVPDGNTKD ETCYFVEALI
RCNLSSLADV SERMAVQGRT DPINH*