GBrowse Details

Vigan.09G176400.01

Basic Information:
Name: Vigan.09G176400.01
Multiple alignment
Variant Information
Position: Chr09:31935568..31937500 (+ strand)
Length: 1933
Functional Information:
Description: Similar to uncharacterized LOC101206421. [XP_004155178.1, Cucumis sativus]
InterPro: Protein of unknown function DUF4079 (IPR025067)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.07,15.33,3.12,0.07,21.06,0.80,37.29
Automatic updates:
Name: NM_001253038 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100780348 (LOC100780348), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:31935568..31935615 (+ strand)
Length: 48
Type: five_prime_UTR
Position: Chr09:31935616..31935954 (+ strand)
Length: 339
Type: CDS
Position: Chr09:31936038..31936301 (+ strand)
Length: 264
Type: CDS
Position: Chr09:31936624..31936783 (+ strand)
Length: 160
Type: CDS
Position: Chr09:31937023..31937201 (+ strand)
Length: 179
Type: CDS
Position: Chr09:31937202..31937500 (+ strand)
Length: 299
Type: three_prime_UTR


>Vigan.09G176400.01
TAATCATTAA AGTGTAATCC TAAATCTCCC TATCAGATAT CAGAATCTAT GTACCTTATC TTCTTCTACT GTTCCACTCT
TGAACATTTT ACTTTATTTT TTCACCCCCA ACAGATCTTG CTTTTGTCTC GTTCCACACT CTTCATTCCT GGGATGGTGA
TGGCTTCCAC ACTCACTTTC CAAACACTTT CAATTCTTCC TAACAAGCCA CACCATCATC ATTCAACAAA ACTTCATCCA
CTTCCTCCAA TCTCTTCAAG ATTCAATCTT TCAAAAGATC CTCCCATTCT CAACACACAA AAAATATTGG ATCAATCCAG
CAATGTTCTC AAAACTGCCT CTCTTTCCCT CACATCACTC ACACTCCCCT TCTTGTTAGA CCAAAAGGAT GTAGCACTTG
CTGTTGATGG GGAGTTTGGT GTATTTGAGG GAAGAACGTT TGCTCTCATA CACCCCATTG TCATGGCTTC TTTGTTCTTG
TATACCTTGT GGGCAGGATA TTTGGGGTGG CAATGGAGGA GAGTCAGGAC TATTCAGAAT GAGATTAATG ACCTCAAGAA
ACAACTCAAA CCTACACCAG TCACTGCAGA AGGTACACCA CTAGAAGTGC CACCATCTCA AATTCAACTC AAAATTCAGC
AACTCACTGA GGAGAGGAAA GAGCTAATCA AAGGCTCTTA CAGGGATAGG CACTATAATG CAGGATCCAT ACTTCTTGGA
TTTGGGGTGC TTGAAGCTGT TGGTGGAGGA TTGAACACGT GGATCAGGAC AGGGAAGTTA TTCCCAAGTC CACATCTGTT
TGGAGGAGTA GGAATTACAG TGTTATGGGC ACTTGCAGCA GCTTTGGTAC CACCAATGCA GAGAGGGAAT GAAACAGCTA
GAAGTCTTCA CATTGCGTTG AATACGTTAA ACGTGCTTCT GTTTGTGTCT CAACTTCCCA CAGGATTTGA CATTTTACTG
AAAGTGTTTG AGTTCACAAA ATGGCCTTGA ATTGAATGTT CTCCATCTTG CAATCACCCC AAATCCATAT TTTATAATTA
CACTTTTTTT TTTTATCAAA GTGCAAATGT GTGTTTAATC AAAGTGAAGG AGTGTCATTG TTAATAATTG AGAAATCTTA
GAGTAGTGAA ATTCAGATTC AAACAATATA TTATGTAAAT GTAAATCGTT TTATGTCTGT CGATGATGTG GTTATGGAGC
TATGTTGTAT ACTGTAATAA CCTTATCTTC ATTTACATCT TTAAACCTTT TCTGTTGTAA TATAGTAATG GAGCTATGTT
GTATGGTAA

>Vigan.09G176400.01
ATGTACCTTA TCTTCTTCTA CTGTTCCACT CTTGAACATT TTACTTTATT TTTTCACCCC CAACAGATCT TGCTTTTGTC
TCGTTCCACA CTCTTCATTC CTGGGATGGT GATGGCTTCC ACACTCACTT TCCAAACACT TTCAATTCTT CCTAACAAGC
CACACCATCA TCATTCAACA AAACTTCATC CACTTCCTCC AATCTCTTCA AGATTCAATC TTTCAAAAGA TCCTCCCATT
CTCAACACAC AAAAAATATT GGATCAATCC AGCAATGTTC TCAAAACTGC CTCTCTTTCC CTCACATCAC TCACACTCCC
CTTCTTGTTA GACCAAAAGG ATGTAGCACT TGCTGTTGAT GGGGAGTTTG GTGTATTTGA GGGAAGAACG TTTGCTCTCA
TACACCCCAT TGTCATGGCT TCTTTGTTCT TGTATACCTT GTGGGCAGGA TATTTGGGGT GGCAATGGAG GAGAGTCAGG
ACTATTCAGA ATGAGATTAA TGACCTCAAG AAACAACTCA AACCTACACC AGTCACTGCA GAAGGTACAC CACTAGAAGT
GCCACCATCT CAAATTCAAC TCAAAATTCA GCAACTCACT GAGGAGAGGA AAGAGCTAAT CAAAGGCTCT TACAGGGATA
GGCACTATAA TGCAGGATCC ATACTTCTTG GATTTGGGGT GCTTGAAGCT GTTGGTGGAG GATTGAACAC GTGGATCAGG
ACAGGGAAGT TATTCCCAAG TCCACATCTG TTTGGAGGAG TAGGAATTAC AGTGTTATGG GCACTTGCAG CAGCTTTGGT
ACCACCAATG CAGAGAGGGA ATGAAACAGC TAGAAGTCTT CACATTGCGT TGAATACGTT AAACGTGCTT CTGTTTGTGT
CTCAACTTCC CACAGGATTT GACATTTTAC TGAAAGTGTT TGAGTTCACA AAATGGCCTT GA

>Vigan.09G176400.01
MYLIFFYCST LEHFTLFFHP QQILLLSRST LFIPGMVMAS TLTFQTLSIL PNKPHHHHST KLHPLPPISS RFNLSKDPPI
LNTQKILDQS SNVLKTASLS LTSLTLPFLL DQKDVALAVD GEFGVFEGRT FALIHPIVMA SLFLYTLWAG YLGWQWRRVR
TIQNEINDLK KQLKPTPVTA EGTPLEVPPS QIQLKIQQLT EERKELIKGS YRDRHYNAGS ILLGFGVLEA VGGGLNTWIR
TGKLFPSPHL FGGVGITVLW ALAAALVPPM QRGNETARSL HIALNTLNVL LFVSQLPTGF DILLKVFEFT KWP*