GBrowse Details

Vigan.09G177600.01

Basic Information:
Name: Vigan.09G177600.01
Multiple alignment
Variant Information
Position: Chr09:32112399..32114184 (- strand)
Length: 1786
Functional Information:
Description: Similar to Homeobox protein. [T2DMU9, Phaseolus vulgaris]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Helix-turn-helix motif (IPR000047)
Homeobox domain (IPR001356)
Leucine zipper, homeobox-associated (IPR003106)
Homeodomain-like (IPR009057)
Homeobox, conserved site (IPR017970)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.41,0.56,31.05,6.67,0.14,16.57,0.52,7.17
Arabidopsis thaliana homolog: AT2G46680.1
Automatic updates:
Name: BT099265 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-16L22 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: KT031175 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_WYQ_3 homeodomain/HOMEOBOX transcription factor (Glyma07g05800.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: KT031176 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_WYQ_5 homeodomain/HOMEOBOX transcription factor (Glyma16g02390.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr09:32112399..32113004 (- strand)
Length: 606
Type: three_prime_UTR
Position: Chr09:32113005..32113364 (- strand)
Length: 360
Type: CDS
Position: Chr09:32113563..32113928 (- strand)
Length: 366
Type: CDS
Position: Chr09:32113929..32114184 (- strand)
Length: 256
Type: five_prime_UTR


>Vigan.09G177600.01
CAAGATACAG GTGGAAGAAC ATCGTGTGTT AAGGTGTCAA CAGGACCAAT GAGTTTTGGA TATAAAGCCA GCAATTGGGG
ACTTCACTCT GACCACCATG ATAGGAACTC CAATAAGCAA AAGCCAATTG ATACTTGCAT ATCAAAACAT ACACACACAA
ACATTCTCTA AAAAATCCTC TATTACCTAA CTCACCTATA TTCAACTCAA GGCCCTTTAG TCTCAGCTAG CAGCAAGTGT
GAGAGTGTTA CACAACATGG AATATACTTA TTCAGCAGAG GGTGCAGAGG CTGAAACTTA CACCAGTAGC AGCACCACCC
CATCAAGTGG CATCAGATCA AAGAAGAAAA GCAACAACAC AAGAAGGTTC AGTGATGATC AAATCAAATC TTTGGAAACC
ATGTTTGAGA CAGAGTCAAG GCTAGAGCCT AGAAAGAAGT TGCAGCTGGC AAGAGACCTT GGATTGCAGC CAAGACAGGT
TGCTATATGG TTTCAGAACA AGAGAGCTAG GTGGAAGTCA AAGCAACTCG AGAGAGACTA TGGTATACTA CAATCCAATT
ACAACAGTTT AGCCTCACGT TTTGAAGCTC TCAAGAAGGA AAAACAAACA TTACTAATTC AGTTGCAGAA GCTGAATCAT
CTAATGCAGA AGCCATTGGA GGCAGGTCAG AGTCGGACAC AAGTTGAAGC AGCAAACAGA ATGGACAGTG AATCAGAAAA
TGGAGGCACC ATGAAATGTG AGCTCGAGGA AAAGCCAAGC CCATCCATAG AAAGATCAGA ACATGCACAC GGCGTTCTGT
CTGATGATGA TGCTAGCATA AAGGTGGAAC ACTTTGGCCT AGAAGATGAA CATGGTCTCT TGAACTTTGC TGAGCATGCT
GATGACTCCT TGACTTCACC GGAAGATTGG AGTGCTTTCG AATCCGATGG TCTCTTAGGC CAAACGACCA GTGATTACCA
ATGGTGGGAC TTCTGGTCCT GAATGAAACA GAACAACCAA AATTTTGTGA AGGAATACGT ATGCATACAT ATTAATGCTT
CATGTTTGGT TCCATATTTT GCATGCAAAT CTTCACATCA ACCCAGATGC AGCTAGTTAT AGCTTCTACA TTTTTTAGCA
AAATTGGCGT ATTTCTTTCT CTATCTTTTG AACAAGTTTC CAAATACAAA CCAAATTAAT AAACAAGGAA ACATCATGAA
ACGCGACCTA AGACAAAAAG CAGAATAAAA CAGGTTTCTT ACATCAATTC CATTCCATAA ACTTCTTTGG AAAACCAACT
TGTTAGAACA TTTTAAAAAG GAAAAATCTT AGTTATTAAT GACTGATTGA CTCACTGAGG TACATTGCTG CAACTATGCA
ATTTATGAAG CTGTTATGTA TCGTTCTTTG AGGGCAATTT GGAACATGAA AGTTCACACG GGATGCTATC CAATTTCAAG
GGCCAAGAGG TGCCCCACTC CACATTATTT TGGTGTGGAC ACAAACTATT AAATAATAAT TTGAATTGAT GAAAACCAGC
TACCACAAGC ATGGTGTTCA TTGCTTATGA AAATTGATGG CCAAATTGCA GCCAAAGGGC TATTCCAG

>Vigan.09G177600.01
ATGGAATATA CTTATTCAGC AGAGGGTGCA GAGGCTGAAA CTTACACCAG TAGCAGCACC ACCCCATCAA GTGGCATCAG
ATCAAAGAAG AAAAGCAACA ACACAAGAAG GTTCAGTGAT GATCAAATCA AATCTTTGGA AACCATGTTT GAGACAGAGT
CAAGGCTAGA GCCTAGAAAG AAGTTGCAGC TGGCAAGAGA CCTTGGATTG CAGCCAAGAC AGGTTGCTAT ATGGTTTCAG
AACAAGAGAG CTAGGTGGAA GTCAAAGCAA CTCGAGAGAG ACTATGGTAT ACTACAATCC AATTACAACA GTTTAGCCTC
ACGTTTTGAA GCTCTCAAGA AGGAAAAACA AACATTACTA ATTCAGTTGC AGAAGCTGAA TCATCTAATG CAGAAGCCAT
TGGAGGCAGG TCAGAGTCGG ACACAAGTTG AAGCAGCAAA CAGAATGGAC AGTGAATCAG AAAATGGAGG CACCATGAAA
TGTGAGCTCG AGGAAAAGCC AAGCCCATCC ATAGAAAGAT CAGAACATGC ACACGGCGTT CTGTCTGATG ATGATGCTAG
CATAAAGGTG GAACACTTTG GCCTAGAAGA TGAACATGGT CTCTTGAACT TTGCTGAGCA TGCTGATGAC TCCTTGACTT
CACCGGAAGA TTGGAGTGCT TTCGAATCCG ATGGTCTCTT AGGCCAAACG ACCAGTGATT ACCAATGGTG GGACTTCTGG
TCCTGA

>Vigan.09G177600.01
MEYTYSAEGA EAETYTSSST TPSSGIRSKK KSNNTRRFSD DQIKSLETMF ETESRLEPRK KLQLARDLGL QPRQVAIWFQ
NKRARWKSKQ LERDYGILQS NYNSLASRFE ALKKEKQTLL IQLQKLNHLM QKPLEAGQSR TQVEAANRMD SESENGGTMK
CELEEKPSPS IERSEHAHGV LSDDDASIKV EHFGLEDEHG LLNFAEHADD SLTSPEDWSA FESDGLLGQT TSDYQWWDFW
S*