GBrowse Details

Vigan.09G180100.01

Basic Information:
Name: Vigan.09G180100.01
Multiple alignment
Variant Information
Position: Chr09:32499973..32504171 (- strand)
Length: 4199
Functional Information:
Description: Similar to Granule bound starch synthase Ib. [B2CP00, Vigna radiata]
GO: Biological Process: biosynthetic process (GO:0009058)
Biological Process: glucan biosynthetic process (GO:0009250)
Molecular Function: starch synthase activity (GO:0009011)
InterPro: Glycosyl transferase, family 1 (IPR001296)
Glycogen/starch synthase, ADP-glucose type (IPR011835)
Starch synthase, catalytic domain (IPR013534)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:8.73,39.14,28.37,314.69,11.98,22.25,0.48,48.38
Arabidopsis thaliana homolog: AT1G32900.1
Automatic updates:
Name: NM_001317313 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata granule-bound starch synthase 1, chloroplastic/amyloplastic-like (LOC106780356), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:32499973..32500306 (- strand)
Length: 334
Type: three_prime_UTR
Position: Chr09:32500307..32500426 (- strand)
Length: 120
Type: CDS
Position: Chr09:32500558..32500686 (- strand)
Length: 129
Type: CDS
Position: Chr09:32500778..32500864 (- strand)
Length: 87
Type: CDS
Position: Chr09:32500956..32501147 (- strand)
Length: 192
Type: CDS
Position: Chr09:32501254..32501430 (- strand)
Length: 177
Type: CDS
Position: Chr09:32501518..32501767 (- strand)
Length: 250
Type: CDS
Position: Chr09:32501850..32501959 (- strand)
Length: 110
Type: CDS
Position: Chr09:32502048..32502148 (- strand)
Length: 101
Type: CDS
Position: Chr09:32502237..32502300 (- strand)
Length: 64
Type: CDS
Position: Chr09:32502716..32502805 (- strand)
Length: 90
Type: CDS
Position: Chr09:32502877..32502975 (- strand)
Length: 99
Type: CDS
Position: Chr09:32503047..32503127 (- strand)
Length: 81
Type: CDS
Position: Chr09:32503210..32503563 (- strand)
Length: 354
Type: CDS
Position: Chr09:32503564..32504171 (- strand)
Length: 608
Type: five_prime_UTR


>Vigan.09G180100.01
ATTTATTTAA GACTTCATTG TCCATACGAG GCATATTCGA ATTATACAAA GCATCATGGC CCCCACAAAA TTTCTGAAAT
CTCAAAAACT CTGTAAGCCT CTAATATCAT TTGAGGTGTC CAAGCCATGC AGGAACACAG AATCAATCTA TGGTTGCCAC
GTGGAATCTA CTACACTACA AATGTTGCAT TCCCAGTGCA ATATTTTGAA GCAATTCAAT AATTCACTGA TAATGTTTCA
TTCTAATGCT TTGTCCTTCT GATTAACCTT GCATCTTGGT CATTCAAACT CCAGCAAACC TCTTCAGTCA GGTTTCTTCA
TAGTCTGGTT AGTTGGTTCC TTTTCTCACT TTCTTCCCTC TTTTCAGTGG TCCTGGTTTG ATGTGCCATT TTTTCAAGTG
CCAATTGTTC TTAATAATTC AAGACAGTTT TTTTTTTTTT TTTTTTAAAA AAAACATGGT TTCCCTTTTC ATTGCAATGA
TGCCGCCATC TTGAATATAT GAAAAAGCTC AGAGCTTTGA ACTCATAACA CTGAATACAA ATGTGTTGCT TCAAGATGAT
TTCAGTTGAG GAAGTAAGAA ACTTTTTTGT TCAGAGTAGG TACCAAAAAT GGCAACTTTG ACTGCTTCGA GTAACTTGAT
CTCTGGAAGT TCTCATGCCC AACATGGACC AACTGCATCG TGTGAGTCTA AAGCAGTGGC AATGGGATTG AAATCTCTAA
AGCACACTAA TACTCATAAT GGACTGAGAA TTTTGAACCC GGTGGATGAG CTACTTAACA GGACCCCAAT CAAAACCAAC
TCAGTACAAG CTAAAAGGAA GGGACTTCAA GGCAAGAATG TCAAGCCTAA AGGTGTAATC ATATGTGGCA TGAATTTGAT
TTTTGTTGGA ACGGAGGTGG GTCCATGGAG CAAAACTGGT GGGTTAGGAG ATGTTCTTGG AGGTCTTCCA CCAGCATTAG
CAGGTTATGG ACATCGAGTT ATGACTATCG CGCCACGTTA TGACCAATAC AAAGATGCCT GGGATACAAG TGTTGTGGTT
GAGCTGAAAG TAGGGGATAG AACTGAAAAG GTTCGCTACT TCCATTGCTA TAAGAGGGGA GTTGATCGTG TCTTTGTGGA
TCACCCTTTG TTTCTTGCAA AGGTCTGGGG GAAAACCGGA ACCAAACTTT ATGGACCAAC TACAGGAGAT GATTATGATG
ACAACCAACT ACGTTTTAGT CTATTTTGCC AGGCAGCTTT GGAAGCACCA AGAGTTCTCA ATCTCAATTC CAGTAAATAT
TTCTCTGGAC CATATGGTGA AGATGTAATT TTCATTGCCA ACGATTGGCA CAGCGCCCTT ATCCCCTGCT ACTTGAAATC
TATGTACCAG TCAGTAGGCA TCTATAAGAA TGCTCGAGTT GTTCTATGTA TCCACAACAT TGCTTACCAA GGAAGATTTG
CATTCGCAGA CTATGCACTT CTAAACCTCC CTGACCAATT TAAAAGCTCC TTTGACTTTA TTGATGGGCA TCTTAAACCA
GTGGTTGGAA GGAAAATCAA TTGGATGAAA GCTGGAATTA TAGAATCATG GTTTGTGATA ACTGTTAGTC CAAACTATGC
TATAGAACTA TTGTCAGGTC CAGACAAAGG TGTGGAACTG GACAACATCC TTCGCAAAAT TGAAGAACGT TTCATTGGAA
TTGTGAATGG CATGGATGTT CAGGAGTGGA ATCCATCCAC TGACAAGTAT ATAGCCGTCA AATACGATGC TTCAACAGTT
TCGGAAGCAA AGGCTCTTTT GAAAGAAGCC CTTCAAGCAG AAGTTGGTTT GCCAGTGGAC AGAAATATTC CTCTCATTGG
TTTCATTGGT AGGCTTGAGG AGCAAAAAGG TTCCGATATT CTTGCAGAAG CCATTCCCCA ATTTATCAAG GAGAATGTTC
AGCTGGTAGC CCTAGGAACA GGAAAAAAAC AAATGGAAAA ACAGCTTCAG GAACTTGAAA TAGCATACCC TGACAAGGCC
AGAGGAGTGG CAAAATTCAA TGTTCCCCTG GCCCACATGA TAATTGCTGG TGCTGATTTT ATATTGGTTC CTAGCAGATT
TGAGCCTTGT GGTCTCATTC AGTTACAAGC TATGCGCTAT GGAACAGTAC CTATTGTTGC CTCAACCGGT GGATTAGTTG
ACACTGTCAA AGAAGGCTTC ACTGGATTTC AGATGGGTTC CTTCAATGTT GAGTGTGAAG CTGTGGATGC TGCTGATGTG
GATGCTATAG CAAAGACTGT CAAAAGGGCC CTTGCAGTCT ACGGAACTCC AGCTTTCACA GAAATGATCA AGAATTGCAT
GGCTCAAGAT CTTTCATGGA AGGGACCTGC TAAGAAGTGG GAGGAAGTGC TGCTAAGCTT GGGAGTTCCT GGCAGTGAAC
CTGGAACTGA TGATGGAGAA GAAATTGCTC CACAGGCAAA GGAAAATGTG GCAACTCCAT AATAAGACCA TATATGTGCA
GGAAGCCTTT TTAGTGAGTC TCATGAAGTT CCCTCAGCCA GTTGCTTCTT ATGGTTCTAT CCTACTTCCA TTTTTTTGTT
TTCTTCAAAA TATATCATAG AAATTAATGT ACATGGACTC CGTGATTACA CTGTTCGGAT CAGTGTTTTC AACGTATTTA
TAAGAGTATG TCTTCAAGAT TAGCATGCAT AAATTAAAGC GTTTCTTAGC AAGCTATATA TGATACTGGC TAACTTCTAC
TGCTTAACTA CTATATTTTG GCTTCAACAG GTGTGTTTAT TTTTGTAAAA TGTAATTTTA CAGCATAAAA ATGTCA

>Vigan.09G180100.01
ATGGCAACTT TGACTGCTTC GAGTAACTTG ATCTCTGGAA GTTCTCATGC CCAACATGGA CCAACTGCAT CGTGTGAGTC
TAAAGCAGTG GCAATGGGAT TGAAATCTCT AAAGCACACT AATACTCATA ATGGACTGAG AATTTTGAAC CCGGTGGATG
AGCTACTTAA CAGGACCCCA ATCAAAACCA ACTCAGTACA AGCTAAAAGG AAGGGACTTC AAGGCAAGAA TGTCAAGCCT
AAAGGTGTAA TCATATGTGG CATGAATTTG ATTTTTGTTG GAACGGAGGT GGGTCCATGG AGCAAAACTG GTGGGTTAGG
AGATGTTCTT GGAGGTCTTC CACCAGCATT AGCAGGTTAT GGACATCGAG TTATGACTAT CGCGCCACGT TATGACCAAT
ACAAAGATGC CTGGGATACA AGTGTTGTGG TTGAGCTGAA AGTAGGGGAT AGAACTGAAA AGGTTCGCTA CTTCCATTGC
TATAAGAGGG GAGTTGATCG TGTCTTTGTG GATCACCCTT TGTTTCTTGC AAAGGTCTGG GGGAAAACCG GAACCAAACT
TTATGGACCA ACTACAGGAG ATGATTATGA TGACAACCAA CTACGTTTTA GTCTATTTTG CCAGGCAGCT TTGGAAGCAC
CAAGAGTTCT CAATCTCAAT TCCAGTAAAT ATTTCTCTGG ACCATATGGT GAAGATGTAA TTTTCATTGC CAACGATTGG
CACAGCGCCC TTATCCCCTG CTACTTGAAA TCTATGTACC AGTCAGTAGG CATCTATAAG AATGCTCGAG TTGTTCTATG
TATCCACAAC ATTGCTTACC AAGGAAGATT TGCATTCGCA GACTATGCAC TTCTAAACCT CCCTGACCAA TTTAAAAGCT
CCTTTGACTT TATTGATGGG CATCTTAAAC CAGTGGTTGG AAGGAAAATC AATTGGATGA AAGCTGGAAT TATAGAATCA
TGGTTTGTGA TAACTGTTAG TCCAAACTAT GCTATAGAAC TATTGTCAGG TCCAGACAAA GGTGTGGAAC TGGACAACAT
CCTTCGCAAA ATTGAAGAAC GTTTCATTGG AATTGTGAAT GGCATGGATG TTCAGGAGTG GAATCCATCC ACTGACAAGT
ATATAGCCGT CAAATACGAT GCTTCAACAG TTTCGGAAGC AAAGGCTCTT TTGAAAGAAG CCCTTCAAGC AGAAGTTGGT
TTGCCAGTGG ACAGAAATAT TCCTCTCATT GGTTTCATTG GTAGGCTTGA GGAGCAAAAA GGTTCCGATA TTCTTGCAGA
AGCCATTCCC CAATTTATCA AGGAGAATGT TCAGCTGGTA GCCCTAGGAA CAGGAAAAAA ACAAATGGAA AAACAGCTTC
AGGAACTTGA AATAGCATAC CCTGACAAGG CCAGAGGAGT GGCAAAATTC AATGTTCCCC TGGCCCACAT GATAATTGCT
GGTGCTGATT TTATATTGGT TCCTAGCAGA TTTGAGCCTT GTGGTCTCAT TCAGTTACAA GCTATGCGCT ATGGAACAGT
ACCTATTGTT GCCTCAACCG GTGGATTAGT TGACACTGTC AAAGAAGGCT TCACTGGATT TCAGATGGGT TCCTTCAATG
TTGAGTGTGA AGCTGTGGAT GCTGCTGATG TGGATGCTAT AGCAAAGACT GTCAAAAGGG CCCTTGCAGT CTACGGAACT
CCAGCTTTCA CAGAAATGAT CAAGAATTGC ATGGCTCAAG ATCTTTCATG GAAGGGACCT GCTAAGAAGT GGGAGGAAGT
GCTGCTAAGC TTGGGAGTTC CTGGCAGTGA ACCTGGAACT GATGATGGAG AAGAAATTGC TCCACAGGCA AAGGAAAATG
TGGCAACTCC ATAA

>Vigan.09G180100.01
MATLTASSNL ISGSSHAQHG PTASCESKAV AMGLKSLKHT NTHNGLRILN PVDELLNRTP IKTNSVQAKR KGLQGKNVKP
KGVIICGMNL IFVGTEVGPW SKTGGLGDVL GGLPPALAGY GHRVMTIAPR YDQYKDAWDT SVVVELKVGD RTEKVRYFHC
YKRGVDRVFV DHPLFLAKVW GKTGTKLYGP TTGDDYDDNQ LRFSLFCQAA LEAPRVLNLN SSKYFSGPYG EDVIFIANDW
HSALIPCYLK SMYQSVGIYK NARVVLCIHN IAYQGRFAFA DYALLNLPDQ FKSSFDFIDG HLKPVVGRKI NWMKAGIIES
WFVITVSPNY AIELLSGPDK GVELDNILRK IEERFIGIVN GMDVQEWNPS TDKYIAVKYD ASTVSEAKAL LKEALQAEVG
LPVDRNIPLI GFIGRLEEQK GSDILAEAIP QFIKENVQLV ALGTGKKQME KQLQELEIAY PDKARGVAKF NVPLAHMIIA
GADFILVPSR FEPCGLIQLQ AMRYGTVPIV ASTGGLVDTV KEGFTGFQMG SFNVECEAVD AADVDAIAKT VKRALAVYGT
PAFTEMIKNC MAQDLSWKGP AKKWEEVLLS LGVPGSEPGT DDGEEIAPQA KENVATP*