GBrowse Details

Vigan.09G181900.01

Basic Information:
Name: Vigan.09G181900.01
Multiple alignment
Variant Information
Position: Chr09:32644004..32647635 (+ strand)
Length: 3632
Functional Information:
Description: Similar to Uncharacterized protein. [I1MKB4, Glycine max]
InterPro: Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain (IPR025564)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.15,0.16,52.63,457.64,0.17,35.63,4.25,69.13
Arabidopsis thaliana homolog: AT2G46820.1
Structure :
Position: Chr09:32644004..32644214 (+ strand)
Length: 211
Type: five_prime_UTR
Position: Chr09:32644215..32644371 (+ strand)
Length: 157
Type: CDS
Position: Chr09:32644632..32644735 (+ strand)
Length: 104
Type: CDS
Position: Chr09:32644826..32644912 (+ strand)
Length: 87
Type: CDS
Position: Chr09:32645040..32645102 (+ strand)
Length: 63
Type: CDS
Position: Chr09:32647043..32647080 (+ strand)
Length: 38
Type: CDS
Position: Chr09:32647169..32647226 (+ strand)
Length: 58
Type: CDS
Position: Chr09:32647227..32647635 (+ strand)
Length: 409
Type: three_prime_UTR


>Vigan.09G181900.01
GAAACGAGTG GTTGTGCTGC AACTCCAACA CTGATTTTGC AAATTATCAA ACGCCAGTGA AATTAAGACA GAAAAAAAAA
TTAGAAACAG AAGAAACATA TCAATAACTT AAAGCCAGTT TCTGACACCA AAGAAAAAGG AAAGGAACTT GATCCATATT
CTGTCGTGGA CTTGAGAGTC TTTCATAGGA CAGTAAATTC CAAACACACC AATGGCTTCA ACCTCTTCTG CTCTCACTGT
ATCCTCTTCT TCCACACTTT TTGATGGCAA GGCTCCAAGG CACTCACCAC CTCTTTCTCC ACAATGTGTC AGCCTTCCCC
TTCCCCATTT CCACTCTCAA AACCGTTCAT GGAAGACCAC TGCTTATAAT GGCAAGATTG CTCGTAATGT TATTGCAATG
GCCACAGGAG AGGCACCGGC CGAAGCTTCC TCGACTGAGG TGCCAGAGAT TGTCAAGACT CTTCAAGAAA CTTGGGACAA
AGTTGATGAT AAGTATGCAG TGAGTTCACT GGCCCTGGTT GGTGTGATTG CATTATGGGG CTCAATTGGA TTGATCTCAG
CAATTGATAG GCTTCCCTTG ATTCCTGGGA TTCTTGAGAT TGTAGGCATT GGCTACACTG GGTGGTTCGT ATATAAGAAC
ATAGTTTTCA AGCCAGACAG GGAAAATTTG GTACAGAAAG TAAAAGAAAC ATACAATGAA ATACTCGGGA GCAACTGAAA
GAGGTAGCAA AATGCTGAGA TGATGTAGGC ATGAAAGGAT CATATCTTTA AGCTTCCTGT TGAAGATTTC ATCATGCTTC
ATTTTATGGC CATAAGCTTC TGACCATACT TTATCCCAAG CACTGTGTGT ACGAAAAAGA TTGTATCATT TTATATATCT
TAATCCACTT TTAAGACAGC TTCATTTCCT CAATTATCTG TAGTGGTTGG TTACAAGGAT AAGAAAAAGC AATTGAGTTC
ATCAAGCTGA ATTCAATGAC TTTGAAAGAA TTTTTTATGA GCCTATTTGT TATCTATCTG CATGCAACTT GCTTGCATAC
TACCTATTTG ATTTTATTAC GGTTCATAAT TTCATATTGT TAGCTGTGTT GGTATTCTCA ATTAGCTTAA CATCGACCTT
CCGCTGT

>Vigan.09G181900.01
ATGGCTTCAA CCTCTTCTGC TCTCACTGTA TCCTCTTCTT CCACACTTTT TGATGGCAAG GCTCCAAGGC ACTCACCACC
TCTTTCTCCA CAATGTGTCA GCCTTCCCCT TCCCCATTTC CACTCTCAAA ACCGTTCATG GAAGACCACT GCTTATAATG
GCAAGATTGC TCGTAATGTT ATTGCAATGG CCACAGGAGA GGCACCGGCC GAAGCTTCCT CGACTGAGGT GCCAGAGATT
GTCAAGACTC TTCAAGAAAC TTGGGACAAA GTTGATGATA AGTATGCAGT GAGTTCACTG GCCCTGGTTG GTGTGATTGC
ATTATGGGGC TCAATTGGAT TGATCTCAGC AATTGATAGG CTTCCCTTGA TTCCTGGGAT TCTTGAGATT GTAGGCATTG
GCTACACTGG GTGGTTCGTA TATAAGAACA TAGTTTTCAA GCCAGACAGG GAAAATTTGG TACAGAAAGT AAAAGAAACA
TACAATGAAA TACTCGGGAG CAACTGA

>Vigan.09G181900.01
MASTSSALTV SSSSTLFDGK APRHSPPLSP QCVSLPLPHF HSQNRSWKTT AYNGKIARNV IAMATGEAPA EASSTEVPEI
VKTLQETWDK VDDKYAVSSL ALVGVIALWG SIGLISAIDR LPLIPGILEI VGIGYTGWFV YKNIVFKPDR ENLVQKVKET
YNEILGSN*