GBrowse Details

Vigan.09G182700.01

Basic Information:
Name: Vigan.09G182700.01
Multiple alignment
Variant Information
Position: Chr09:32775348..32785320 (+ strand)
Length: 9973
Functional Information:
Description: Similar to LHY protein. [Q8L5P7, Phaseolus vulgaris]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Myb domain, plants (IPR006447)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.78,0.73,149.94,352.93,14.20,3.93,1.72,141.29
Arabidopsis thaliana homolog: AT1G01060.1
Automatic updates:
Name: NM_001248258 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max late elongated hypocotyl and circadian clock associated-1-like protein 1 (LCL1), mRNA.
PubMed ID: 31852439 NCBI(pubmed)
20091337 NCBI(pubmed)
18707796 NCBI(pubmed)
15299132 NCBI(pubmed)
Status: Known Variant
Name: NM_001358990 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max LHY1/CCA1-like protein (LCL4), mRNA.
PubMed ID: 31852439 NCBI(pubmed)
20091337 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr09:32775348..32776485 (+ strand)
Length: 1138
Type: five_prime_UTR
Position: Chr09:32776486..32776524 (+ strand)
Length: 39
Type: CDS
Position: Chr09:32776611..32776722 (+ strand)
Length: 112
Type: CDS
Position: Chr09:32776895..32776956 (+ strand)
Length: 62
Type: CDS
Position: Chr09:32782842..32783063 (+ strand)
Length: 222
Type: CDS
Position: Chr09:32783158..32784591 (+ strand)
Length: 1434
Type: CDS
Position: Chr09:32784670..32785050 (+ strand)
Length: 381
Type: CDS
Position: Chr09:32785051..32785320 (+ strand)
Length: 270
Type: three_prime_UTR


>Vigan.09G182700.01
TCAGTCTCAA AAAAATAAGG AGTCGTTAAT TTTCGGAAGA AAATAATAAA TCCACACAAA ATTATAGTGG CTGAGATTGC
TCCTGGCGCT TAAACACTTT CGGGGTGAGT GAGCGTGTAG CAATTTCGGG TTCTGTTTTT GTTTTCGTTT CAGCAAAACC
TCTCTTCTTC TTCTTCTGAT TGCTTCCATC ACGCTATTTT TCGATTTTCG TTTTTCTCTT TTTCGGTTTC CGATCTGAAC
TCTATTCGAT TCACCATTGC CGGAAAATGA GCCCTCCGAC GAGTGTCCGG TGATGATCGC TCACGTGAGA GGTTCTTCTT
CTTCTTCTTG TTCTTCTTCA ATGTCATGGT TTCCTTCCGA GGTATTCGTT TTCCTTTTTT ATTTTGTTTT GTTTTGGTTT
ATTTTATTTG TTCTGTTTGG TTTCCGAGAA AATTGAACCG GACTGCTGCG AACGGATTTA CCTCATCTGG ATTTGGATGT
AACAGGTGCT GTCGGTACTC TCAGCGCGAC GCTGTTGAGT TGAATTTCGA TGGTTTTGAG TTGCTTTGTG ATTATATTTT
CTCGGCAACC AAACAGGAGG AATCGAAATT TGCAGTGATT AGTAAAGTAT TTGTGAAAGT GAAGATAGAA ATAGTTGTTA
TTGATGATGT TGTGATTTCT TTTTGTTTCT ATACTAATTG TAGTTTCCCT CTCTTCGCGT TTGAAAGGTT TTGGCGCTGT
CGAGTTCGTT TTGGTGAGGA TTCTGATTAA GTAAATTTTC TTTTATTCAT TCAGAGCAGA AGCGTCTCTC TCGCTGTCTC
TCTATATCTA TTACTCTCTC CCCCTCGGGT GATACTTGAA ATTTGTTGAA TATTTTTTCT TTCTTCATCT TCTATGTAGT
ACTATTTTAC GTGTGACATT TGAATTGGAG TGCTTATTCC ATCTTATACA AAACAGAGAC GGATCTCTTC CTATTATTCT
CGCTTTGTTT CTTTTGCAGT AACATCACCA CAATACCTTC TTCAGAGTCT GCTCACTTTC ATCACAACGG CTTTACTCTT
TACTGTTTTT CGTGTTACAA AAAATGAAAG GCGCTATTCC CTGTATCCAC TCCTTGTCAG GGAAGATCTG AAGCAGCGGT
AGCTGCTCAC GTCCTGTAAT GGACGCGTAC TCCTCTGGAG AAGAAGTAGT TGTAAAGACG AGAAAACCGT ATACAATCAC
AAAGCAAAGG GAACGATGGA CAGAGGAGGA GCATAATAGG TTTCTAGAAG CTTTGAAGCT GCACGGGCGA GCATGGCAGC
GCATAGAAGA GCATATAGGA ACAAAGACTG CCGTGCAAAT CAGGAGCCAC GCACAGAAGT TTTTCACAAA GTTGGAGAAA
GAAGCCCTTG TAAAGGGTGT TCCAATTGGA CAAGCTCTTG ATATAGATAT TCCCCCTCCA CGGCCCAAAA GAAAACCAAG
CAATCCTTAT CCTCGGAAGA CCAGGATTGG TACCGCAACA TTACATAGTG GAGCAAAGGA TGGAAAGATC AATTTAGTCG
AATTTTCACA TGACAACCAA GCACTGGACT TGGAAAAAGA ACCAGTTCCG GAGATTTATG ATTTAGACGA GGGGCCAACA
ACAGTAAAGG AAAATAAGGA TGAGAACTGT TCAAAAGTAT TTACAGTTAT CCAGGAGGTA CCATGTTCCT CTCTATCTTC
AGCAAACAGG AGTTCAATAT CTATGTCAGT GCCGCTGGGA AATTCATGCG TATTCAAGGA GACTACAACT TCAGTGAAAG
AGGTAATAAC TCCAGATGAC AAAACTGAAT CATTTCTGAC TGTTGAACTT GAAAATGGGA ATTTGGAGAT CAATGGTGGA
AAACAGGCAA ATGGAACTAG TAAAAACTCC ACGTTAGAGA ATTCTGATGC TTTACTAATG AAATTGGTTC AAAATGAGAA
AACAGATGGT CTCGATAGTG CATTAACAAT AGAAGGAATG CAAGGCAATA ATCAGAATTA CCCTAGACAT GTAACTGTGC
ACGTTGTTGA CGGGAACCTT GGAACATGTA CTCAAAATCC ATCACAAGAT ATGCTGTTTC GTGACTGCAT GTTTCAGCCA
ATAGGAGGGG CTAATGGGCA ACCAAATCTT TTCACCAATT CAGCTCCATC GAACACAAGA GAAAGTCAAA ATAACACAGC
ACGATCTTCT GCTCATCAAT CATTTCTTCC GTATCCTCCC TTCACCCAAC ACAACCAGGA CGATTACCAA TCATTTCTTC
ACATGTCTTC CACATTTTCT AATCTTATTG TCTCTACCTT GCTGCAAAAC CCAGCAGCCC ATGCTGCAGC AAGTTTCGCT
GCTACATTTT GGCCCTATGC AAATCCAGAG ACTTCAGCAG ATTCTCCTAG GTGCTCTCAA GGAGGTTTCA CATCTAGACA
TATTGGTTCC CCTCCAAGCG TTGTAGCTAT TGCAGCTGCT ACTGTAGCTG CTGCAACTGC GTGGTGGGCA GCTCATGGAC
TGCTTCCTTT GTGTGCTCCT CTTCATACTG CTTTTGCTTG TCCTCCTGCA TCTGTGACTG CAGTCCCATC AATGAATACT
TCTGAAACAC CATCTCTAAA GGCAGAACAA GAAAAGAGTA CTCTACAAAA TCCTCCTCTG CATGATCAGA TGATGCATCC
AGAATACTCG GAAGCTCCTC AAGCTCAACA TTCAGCTTCA AAATCACTAG CTGTCATTTC ATCAGATTCT GAGAGTGGAG
ATGTCAAGTT AAATACTTCA CCAAAGGCTA CCGATCATGA GACGAACGAA ATAATTTCTG AGCACCTTGA TTCCAACAAA
ACGAAAGGCA GAAAACAGGT TGACCGTTCC TCGTGTGGTT CCAACACAGC CTCAAGCAGC GATGTGGAAA CTGATGCACT
AGGGAAGGAT GAGAAAGGGA AGGAAGAGCC TGAAACTCCC GATGCTAACC ATTTAGCCAT TGAGTTTAGT AATCGTCGTA
GAAGCATTTG CAACCTTACC GATTCTTGGA AAGAGGTCTC TGAAGAGGGG AAACTAGCAT TTCAGGCTTT GTTCTCCAGA
GAGGTGTTAC CTCAAAGCTT TTCACCTCCT CATGCTTTAA CGAATAAGGA CCAAATGGGC ATCACCAATG ATAACCAGCA
AACCATAGAT GACAGAAATG AAGACCTTGA AAGCAAGAAA TGCAGTTCTA TCTATAAACC AATGCAGAAA AATCCGCCAT
TTGTAGAAAA TAATGTGGGA CTGTTAACCT TAGGGCTTGG ACAAGGAAAG CTTAAGACTC GTCGAACAGG CTTTAAACCC
TACAAAAGAT GTTCCATGGA GGCCAAGGAA AATAGGGTTG GAGCGAGCAA TCAAGGTGAA GAGAAATGTT GTAAGAGAAT
ACGTTTGGAA GGGGATACTT CGACTTGAGG TTTGATACAT GCATGCATGC AATAACATAA AGGCAACCTT TGGTTTTTGC
ATATCATTTC TTAATCCCCC TCAACGGTGT ACCTATAATG TTTATTTCTA ATTCTGCAGC TCACGAAACT TGTCGTGTAG
ATGTGTGTAC CATATTAAAT TACTGTGTAC GCTCTTTTAC TATCTTGGAC TGGTGTTAAT GTTGTTAAAC TCCGCTAAAT
AGACTTTAGA TAAGAAACAT TAAGTATTGT TTGAGCCTGA ACATTAAGTG ATTTATGA

>Vigan.09G182700.01
ATGGACGCGT ACTCCTCTGG AGAAGAAGTA GTTGTAAAGA CGAGAAAACC GTATACAATC ACAAAGCAAA GGGAACGATG
GACAGAGGAG GAGCATAATA GGTTTCTAGA AGCTTTGAAG CTGCACGGGC GAGCATGGCA GCGCATAGAA GAGCATATAG
GAACAAAGAC TGCCGTGCAA ATCAGGAGCC ACGCACAGAA GTTTTTCACA AAGTTGGAGA AAGAAGCCCT TGTAAAGGGT
GTTCCAATTG GACAAGCTCT TGATATAGAT ATTCCCCCTC CACGGCCCAA AAGAAAACCA AGCAATCCTT ATCCTCGGAA
GACCAGGATT GGTACCGCAA CATTACATAG TGGAGCAAAG GATGGAAAGA TCAATTTAGT CGAATTTTCA CATGACAACC
AAGCACTGGA CTTGGAAAAA GAACCAGTTC CGGAGATTTA TGATTTAGAC GAGGGGCCAA CAACAGTAAA GGAAAATAAG
GATGAGAACT GTTCAAAAGT ATTTACAGTT ATCCAGGAGG TACCATGTTC CTCTCTATCT TCAGCAAACA GGAGTTCAAT
ATCTATGTCA GTGCCGCTGG GAAATTCATG CGTATTCAAG GAGACTACAA CTTCAGTGAA AGAGGTAATA ACTCCAGATG
ACAAAACTGA ATCATTTCTG ACTGTTGAAC TTGAAAATGG GAATTTGGAG ATCAATGGTG GAAAACAGGC AAATGGAACT
AGTAAAAACT CCACGTTAGA GAATTCTGAT GCTTTACTAA TGAAATTGGT TCAAAATGAG AAAACAGATG GTCTCGATAG
TGCATTAACA ATAGAAGGAA TGCAAGGCAA TAATCAGAAT TACCCTAGAC ATGTAACTGT GCACGTTGTT GACGGGAACC
TTGGAACATG TACTCAAAAT CCATCACAAG ATATGCTGTT TCGTGACTGC ATGTTTCAGC CAATAGGAGG GGCTAATGGG
CAACCAAATC TTTTCACCAA TTCAGCTCCA TCGAACACAA GAGAAAGTCA AAATAACACA GCACGATCTT CTGCTCATCA
ATCATTTCTT CCGTATCCTC CCTTCACCCA ACACAACCAG GACGATTACC AATCATTTCT TCACATGTCT TCCACATTTT
CTAATCTTAT TGTCTCTACC TTGCTGCAAA ACCCAGCAGC CCATGCTGCA GCAAGTTTCG CTGCTACATT TTGGCCCTAT
GCAAATCCAG AGACTTCAGC AGATTCTCCT AGGTGCTCTC AAGGAGGTTT CACATCTAGA CATATTGGTT CCCCTCCAAG
CGTTGTAGCT ATTGCAGCTG CTACTGTAGC TGCTGCAACT GCGTGGTGGG CAGCTCATGG ACTGCTTCCT TTGTGTGCTC
CTCTTCATAC TGCTTTTGCT TGTCCTCCTG CATCTGTGAC TGCAGTCCCA TCAATGAATA CTTCTGAAAC ACCATCTCTA
AAGGCAGAAC AAGAAAAGAG TACTCTACAA AATCCTCCTC TGCATGATCA GATGATGCAT CCAGAATACT CGGAAGCTCC
TCAAGCTCAA CATTCAGCTT CAAAATCACT AGCTGTCATT TCATCAGATT CTGAGAGTGG AGATGTCAAG TTAAATACTT
CACCAAAGGC TACCGATCAT GAGACGAACG AAATAATTTC TGAGCACCTT GATTCCAACA AAACGAAAGG CAGAAAACAG
GTTGACCGTT CCTCGTGTGG TTCCAACACA GCCTCAAGCA GCGATGTGGA AACTGATGCA CTAGGGAAGG ATGAGAAAGG
GAAGGAAGAG CCTGAAACTC CCGATGCTAA CCATTTAGCC ATTGAGTTTA GTAATCGTCG TAGAAGCATT TGCAACCTTA
CCGATTCTTG GAAAGAGGTC TCTGAAGAGG GGAAACTAGC ATTTCAGGCT TTGTTCTCCA GAGAGGTGTT ACCTCAAAGC
TTTTCACCTC CTCATGCTTT AACGAATAAG GACCAAATGG GCATCACCAA TGATAACCAG CAAACCATAG ATGACAGAAA
TGAAGACCTT GAAAGCAAGA AATGCAGTTC TATCTATAAA CCAATGCAGA AAAATCCGCC ATTTGTAGAA AATAATGTGG
GACTGTTAAC CTTAGGGCTT GGACAAGGAA AGCTTAAGAC TCGTCGAACA GGCTTTAAAC CCTACAAAAG ATGTTCCATG
GAGGCCAAGG AAAATAGGGT TGGAGCGAGC AATCAAGGTG AAGAGAAATG TTGTAAGAGA ATACGTTTGG AAGGGGATAC
TTCGACTTGA 

>Vigan.09G182700.01
MDAYSSGEEV VVKTRKPYTI TKQRERWTEE EHNRFLEALK LHGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEALVKG
VPIGQALDID IPPPRPKRKP SNPYPRKTRI GTATLHSGAK DGKINLVEFS HDNQALDLEK EPVPEIYDLD EGPTTVKENK
DENCSKVFTV IQEVPCSSLS SANRSSISMS VPLGNSCVFK ETTTSVKEVI TPDDKTESFL TVELENGNLE INGGKQANGT
SKNSTLENSD ALLMKLVQNE KTDGLDSALT IEGMQGNNQN YPRHVTVHVV DGNLGTCTQN PSQDMLFRDC MFQPIGGANG
QPNLFTNSAP SNTRESQNNT ARSSAHQSFL PYPPFTQHNQ DDYQSFLHMS STFSNLIVST LLQNPAAHAA ASFAATFWPY
ANPETSADSP RCSQGGFTSR HIGSPPSVVA IAAATVAAAT AWWAAHGLLP LCAPLHTAFA CPPASVTAVP SMNTSETPSL
KAEQEKSTLQ NPPLHDQMMH PEYSEAPQAQ HSASKSLAVI SSDSESGDVK LNTSPKATDH ETNEIISEHL DSNKTKGRKQ
VDRSSCGSNT ASSSDVETDA LGKDEKGKEE PETPDANHLA IEFSNRRRSI CNLTDSWKEV SEEGKLAFQA LFSREVLPQS
FSPPHALTNK DQMGITNDNQ QTIDDRNEDL ESKKCSSIYK PMQKNPPFVE NNVGLLTLGL GQGKLKTRRT GFKPYKRCSM
EAKENRVGAS NQGEEKCCKR IRLEGDTST*