GBrowse Details

Vigan.09G185000.01

Basic Information:
Name: Vigan.09G185000.01
Multiple alignment
Variant Information
Position: Chr09:33024147..33026445 (- strand)
Length: 2299
Functional Information:
Description: Similar to inactive purple acid phosphatase 29-like. [XP_002269022.1, Vitis vinifera]
GO: Biological Process: lipid metabolic process (GO:0006629)
Cellular Component: cytoplasm (GO:0005737)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors (GO:0016627)
InterPro: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (IPR001104)
Protein of unknown function DUF1295 (IPR010721)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.71,0.31,3.10,1.68,7.67,12.09,13.52,3.22
Arabidopsis thaliana homolog: AT2G46890.1
Automatic updates:
Name: NM_001255541 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100786065 (LOC100786065), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:33024147..33024474 (- strand)
Length: 328
Type: three_prime_UTR
Position: Chr09:33024475..33024954 (- strand)
Length: 480
Type: CDS
Position: Chr09:33025570..33025833 (- strand)
Length: 264
Type: CDS
Position: Chr09:33025925..33026158 (- strand)
Length: 234
Type: CDS
Position: Chr09:33026159..33026445 (- strand)
Length: 287
Type: five_prime_UTR


>Vigan.09G185000.01
TATATATATT ACTCTATTAC ATTTCTTATT ATTAGTGTGA AATATCTGCA ATGAAATCTC TCTTCCAAAA GACCTTTTCA
TGAATCTGCA AAACAAAAAT CCGACTCTTT ATTTAAGAGT TCAATATAAT TTCACTATAA CCAACATAAT ATATATTATT
TAGTATAGAT TAGTAAGATT TACAAAAGTA TTTGTCCTAA TTCCTCTATA AAAGAGGAAG CTATAAACGC ATACATTCAA
TACAACATAG GATCAAATCA AATTGATTCA AAGGGCCAGA CAACAATATG TCAAGTTGTT GCAATTTGAA GAACGCTGTG
ATAGCATTTT TGGTTCCACT TCCCTCCATC TTCTTCTACC TCTCATTTCT CAACCACTAC GACTCACCGA ATTCTTCCTC
ATCTTGGTCA AGTTTATGGT CATGGTGCTA TCACCACCCT CTTGTATTAG CCAACACTCT CTTCTTCCTC AACGTCAATG
TTCTCTTCTG GGTCATAGGC CTAATCCAGT CCAGCCACTG GATGATTGAC CCCTATTGGA CTGTGATACC TGTGATGCTT
GTTCACTACT ATGCCACTCA CCCTTTGGCT AATTATGATT TGTGGAGGTC GAGGATCGTG GTTTTATTGA CTTGGGTGTG
GAGTGTGAGG CTCACTCATA ACTATTTCAG GAGAGAAGGG TGGCAATGGG GTGCCAGAGA AGACTGGCGT TTCACTGAGA
TGAGTGAACA GTACGGAAAG CAATGGTGGT GGATTTCATT CTTTGCAGTC TATGTCTCCC AACAGATGTT TTTGATTGCA
TTGTCCCTTC CCTTGTATGC GGTCCATACT GTCAATCAGC CATTGAGCAT GTGGGACTTG GTAGCTACAG CTGTCTGTTT
ATGTGGCATT GTGATAGCAT ACTTTTCTGA TACACAGCTC TATGAGTTTG TGAATAGAAA CAACAAGCTG AAGGAGCTCA
GTAAACCTGT GGCTCCTGTT CTTGACAGTG GCTTGTGGTA TTACTGCCGG CATCCAAATT ACTTTGGTGA GCAGCTGTGG
TGGTGGGGGC TGGCTGTGTT TGCATGGAAT CTGGGACTTG GGTGGACCTT TATTGGAGCT TTGGTTAATA CTATGTGTTT
GGCTTATGTG ACTAAGCTTG TGGAGGACCG AATGTTGAAA AAAGAAAGTA GAGCAAAAGC GTTTAGACTA TATCAAAAGA
CAACTTCTGT GTGGATACCT TGGTTCAAGT CCCCTCCTTC AGGAGTTAAA AATAAGAATG TTTGATCTTT TCTTGGTGCA
GTGGTAATGG TTGCTTTTGT AAAACTATCA TTTTTGTATC TTATAAATGT TGCTTGGTTC TTATTTATTT AATGAAATCA
GAAATGGTAC GTGTTCTATA TATGTATTTT GCTGTAATGT TGTATAAAAT CGTAATGCAT CCGCTACATT TGGAGTTGTA
CTTCCTGAAT CTGGCTTTTC AGCTTCAAAA TGTCTGATAG TGTATTTGGC TGTGCATATA CATTCACTAG CCCTTTTATC
TAGGCTTCTT TCTGTTCACG GGAAAGCCTG GAGCCCTAAA GAAATATTTT ACAGTTATTT TTGGACCATT GAA

>Vigan.09G185000.01
ATGTCAAGTT GTTGCAATTT GAAGAACGCT GTGATAGCAT TTTTGGTTCC ACTTCCCTCC ATCTTCTTCT ACCTCTCATT
TCTCAACCAC TACGACTCAC CGAATTCTTC CTCATCTTGG TCAAGTTTAT GGTCATGGTG CTATCACCAC CCTCTTGTAT
TAGCCAACAC TCTCTTCTTC CTCAACGTCA ATGTTCTCTT CTGGGTCATA GGCCTAATCC AGTCCAGCCA CTGGATGATT
GACCCCTATT GGACTGTGAT ACCTGTGATG CTTGTTCACT ACTATGCCAC TCACCCTTTG GCTAATTATG ATTTGTGGAG
GTCGAGGATC GTGGTTTTAT TGACTTGGGT GTGGAGTGTG AGGCTCACTC ATAACTATTT CAGGAGAGAA GGGTGGCAAT
GGGGTGCCAG AGAAGACTGG CGTTTCACTG AGATGAGTGA ACAGTACGGA AAGCAATGGT GGTGGATTTC ATTCTTTGCA
GTCTATGTCT CCCAACAGAT GTTTTTGATT GCATTGTCCC TTCCCTTGTA TGCGGTCCAT ACTGTCAATC AGCCATTGAG
CATGTGGGAC TTGGTAGCTA CAGCTGTCTG TTTATGTGGC ATTGTGATAG CATACTTTTC TGATACACAG CTCTATGAGT
TTGTGAATAG AAACAACAAG CTGAAGGAGC TCAGTAAACC TGTGGCTCCT GTTCTTGACA GTGGCTTGTG GTATTACTGC
CGGCATCCAA ATTACTTTGG TGAGCAGCTG TGGTGGTGGG GGCTGGCTGT GTTTGCATGG AATCTGGGAC TTGGGTGGAC
CTTTATTGGA GCTTTGGTTA ATACTATGTG TTTGGCTTAT GTGACTAAGC TTGTGGAGGA CCGAATGTTG AAAAAAGAAA
GTAGAGCAAA AGCGTTTAGA CTATATCAAA AGACAACTTC TGTGTGGATA CCTTGGTTCA AGTCCCCTCC TTCAGGAGTT
AAAAATAAGA ATGTTTGA

>Vigan.09G185000.01
MSSCCNLKNA VIAFLVPLPS IFFYLSFLNH YDSPNSSSSW SSLWSWCYHH PLVLANTLFF LNVNVLFWVI GLIQSSHWMI
DPYWTVIPVM LVHYYATHPL ANYDLWRSRI VVLLTWVWSV RLTHNYFRRE GWQWGAREDW RFTEMSEQYG KQWWWISFFA
VYVSQQMFLI ALSLPLYAVH TVNQPLSMWD LVATAVCLCG IVIAYFSDTQ LYEFVNRNNK LKELSKPVAP VLDSGLWYYC
RHPNYFGEQL WWWGLAVFAW NLGLGWTFIG ALVNTMCLAY VTKLVEDRML KKESRAKAFR LYQKTTSVWI PWFKSPPSGV
KNKNV*