GBrowse Details

Vigan.09G186800.01

Basic Information:
Name: Vigan.09G186800.01
Multiple alignment
Variant Information
Position: Chr09:33226546..33232881 (+ strand)
Length: 6336
Functional Information:
Description: Similar to Uncharacterized protein. [I1KHJ4, Glycine max]
GO: Biological Process: biosynthetic process (GO:0009058)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: pyridoxal phosphate binding (GO:0030170)
InterPro: Aminotransferase, class I/classII (IPR004839)
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421)
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (IPR015422)
Pyridoxal phosphate-dependent transferase (IPR015424)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:15.46,50.70,49.28,20.10,128.60,115.64,43.86,29.27
Arabidopsis thaliana homolog: AT1G17290.1, AT1G72330.3
Automatic updates:
Name: NM_001250624 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max alanine aminotransferase 1 (ALAAT1), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:33226546..33226806 (+ strand)
Length: 261
Type: five_prime_UTR
Position: Chr09:33226807..33227025 (+ strand)
Length: 219
Type: CDS
Position: Chr09:33227696..33227746 (+ strand)
Length: 51
Type: CDS
Position: Chr09:33228003..33228053 (+ strand)
Length: 51
Type: CDS
Position: Chr09:33228779..33228844 (+ strand)
Length: 66
Type: CDS
Position: Chr09:33228928..33228989 (+ strand)
Length: 62
Type: CDS
Position: Chr09:33229345..33229423 (+ strand)
Length: 79
Type: CDS
Position: Chr09:33229505..33229609 (+ strand)
Length: 105
Type: CDS
Position: Chr09:33229722..33229832 (+ strand)
Length: 111
Type: CDS
Position: Chr09:33230072..33230209 (+ strand)
Length: 138
Type: CDS
Position: Chr09:33230481..33230555 (+ strand)
Length: 75
Type: CDS
Position: Chr09:33230770..33230890 (+ strand)
Length: 121
Type: CDS
Position: Chr09:33230988..33231142 (+ strand)
Length: 155
Type: CDS
Position: Chr09:33231637..33231711 (+ strand)
Length: 75
Type: CDS
Position: Chr09:33232005..33232208 (+ strand)
Length: 204
Type: CDS
Position: Chr09:33232385..33232501 (+ strand)
Length: 117
Type: CDS
Position: Chr09:33232502..33232881 (+ strand)
Length: 380
Type: three_prime_UTR


>Vigan.09G186800.01
AATTTATAAA ATGAAAGAAC GTAGTAACAA AGAAAAGAAA GGTATAAGTA CAAATTCTAT TTATAGTGCA TGGATGGCTG
AGATCTTGAC ACACTGTGGG CGGCGTGGAA GTTTGAGGTG GAAAGTTCAC CAAAAGGAAC AAACAAGTCT TACATTGTTT
CTTTCTAGAT ACACTCACGC GCCTTCTGTC TCTTCTCAAC ATTGTAAGCA CATCCAGACC CTCAAATCTC CATCCTCCCC
TTTTTATATA TAACCCTCAC AATGCGGAGA ATCGTTGCAG ACAGATTCAG GCGCCTTTTC AACCGTTCAT TCCTTCTTCA
TCGTCATCAT CACAATCACA ATCACCCTCC CTTTCCTGCT TCTTCCTCTC TCACTTCTCA CTATCCGTTT TCCCCCTATC
GCTTCTTCTT TTCTACTCCT TTTTCTTCCA TGGCTTCTGA TTCACCTTTC CCTGTCACTG CTCAAAACAT CAACCCAAAG
GTTCTGAAAT GTGAGTACGC CGTTAGAGGA GAGGTTGTCA CACTTGCTCA GAATTTGCAA AAGGATTTAC TGGCCAATCC
CGGTTCTCAT CCATTTGACG AGATACTTTA CTGCAACATT GGAAATCCTC AGTCTCTTGG CCAGTCTCCA ATAACCTTTT
TCCGAGAGGT TCTTGCTTTA ACTGATCATC CAGCTATATT GGACAAAAGT GAAACACAGG GTTTGTTCAG CGCTGATGCA
ATAGAACGAG CTTGGCAGAT TGTGGAACAG ATTCCCGGTA GAGCAACTGG TGCCTATAGC CACAGTCAGG GTGTCAAGGG
TTTGCGTGAT ACAATAGCTG CTGGAATTGA AGAGCGTGAT GGTTTTCCTG CTAATCCTGA TGACATTTTC ATGACAGATG
GTGCAAGCCC TGCAGTCCAT AACATGATGC AATTACTTAT CAGGTCGGAA AATGATGGTA TTTTGTGTCC CATTCCACAG
TATCCTCTAT ACTCAGCTTC AATTGCCCTC CATGGTGGCT TCTTGGTACC TTATTATCTA GATGAAGCAA GCGGTTGGGG
ATTGGAAATA CCTGAACTCA AGAAGCAATT GGACGCTGCC AAGTCTAAGG GCATCAATGT TAGGGCTTTA GTTGTTATAA
ATCCTGGCAA TCCAACGGGG CAGGTTCTTT CTGAGGAAAA TCAGCGCCAT ATAGTAGATT TTTGCAAGCA AGAAGGTTTG
GTTCTTTTAG CTGATGAGGT ATATCAAGAA AATGTTTATG TCCCTGAGAA GAAATTTCAC TCATTCAAGA AGGTATCTCG
GTCCATGGGA TATGGTGAGA ATGACGTCAC TTTAGTATCC TTTCAATCAG TCTCCAAAGG CTACCATGGG GAGTGTGGGA
AACGAGGAGG TTATATGGAG GTGACTGGCT TTTCTGCAGA AGTGAGGGAG CAAATATATA AAATGGCATC TGTCAACCTT
TGCTCTAATA TCTCTGGTCA AATTCTTGCA AGCTTGGTCA TGAGTCCACC TAAGGTTGGA GACGAGTCCT ATGAATCATT
CATGGCTGAG AAGGGAAATA TTTTGGCATC GCTTGCTAGG CGTGCAAAGA CACTAGAAGA TGCATTCAAC AAACTAGAGG
GTGTAACATG CAACAAAGCA GAAGGGGCAA TGTATCTGTT TCCCCAAATT CGTCTGTCCC AAAAGGCTAT CAAAGCTGCA
GAGGAGGCAA AAACTGCACC TGATAACTTC TATTGCAAGC GGTTGCTTAA TGCCACAGGA GTAGTAGTTG TTCCTGGTTC
TGGTTTTGGA CAGGTTCCTG GCACATGGCA TTTCAGATGC ACCATTTTGC CCCAAGAAGA AAAGATTCCA GCCATTGTCT
CCCGTTTGAC AGAGTTCCAT GAAAAATTCA TGGATGAGTT CCGTGACTAA GTCCTGCTTC TATTTCATCC CTAAACACAA
AGGGTACCCA ATTGAAATTT GATGAGAATG AATTTTGCAG AAATAGGACC TTTTGTTTTC TGGAATAAAT TTGTTGTTAG
CTCCACTTAT ACATGCATAT TGAATGTGCA AGACGTGGAA GCTTATTCCT ATATTACCTC TTTTTAATTG AATAAACTTT
TTTCGAACCA ACCTTCTTTG TTATACTCCA ATGCAAGGAT TAAAGCCTCA AGAACCAGTT GAAGAGGCTG TTAGGCAATG
GTGGGATAGA AACAAGTCAT AATATTTTGA AACAAACCTT AAAGAAATGA AATAAAAGAA ATTGCAAAAT GAAATAATCA
ACTGGGTCTC TTTGAAGAAA ACAGTGACTC 

>Vigan.09G186800.01
ATGCGGAGAA TCGTTGCAGA CAGATTCAGG CGCCTTTTCA ACCGTTCATT CCTTCTTCAT CGTCATCATC ACAATCACAA
TCACCCTCCC TTTCCTGCTT CTTCCTCTCT CACTTCTCAC TATCCGTTTT CCCCCTATCG CTTCTTCTTT TCTACTCCTT
TTTCTTCCAT GGCTTCTGAT TCACCTTTCC CTGTCACTGC TCAAAACATC AACCCAAAGG TTCTGAAATG TGAGTACGCC
GTTAGAGGAG AGGTTGTCAC ACTTGCTCAG AATTTGCAAA AGGATTTACT GGCCAATCCC GGTTCTCATC CATTTGACGA
GATACTTTAC TGCAACATTG GAAATCCTCA GTCTCTTGGC CAGTCTCCAA TAACCTTTTT CCGAGAGGTT CTTGCTTTAA
CTGATCATCC AGCTATATTG GACAAAAGTG AAACACAGGG TTTGTTCAGC GCTGATGCAA TAGAACGAGC TTGGCAGATT
GTGGAACAGA TTCCCGGTAG AGCAACTGGT GCCTATAGCC ACAGTCAGGG TGTCAAGGGT TTGCGTGATA CAATAGCTGC
TGGAATTGAA GAGCGTGATG GTTTTCCTGC TAATCCTGAT GACATTTTCA TGACAGATGG TGCAAGCCCT GCAGTCCATA
ACATGATGCA ATTACTTATC AGGTCGGAAA ATGATGGTAT TTTGTGTCCC ATTCCACAGT ATCCTCTATA CTCAGCTTCA
ATTGCCCTCC ATGGTGGCTT CTTGGTACCT TATTATCTAG ATGAAGCAAG CGGTTGGGGA TTGGAAATAC CTGAACTCAA
GAAGCAATTG GACGCTGCCA AGTCTAAGGG CATCAATGTT AGGGCTTTAG TTGTTATAAA TCCTGGCAAT CCAACGGGGC
AGGTTCTTTC TGAGGAAAAT CAGCGCCATA TAGTAGATTT TTGCAAGCAA GAAGGTTTGG TTCTTTTAGC TGATGAGGTA
TATCAAGAAA ATGTTTATGT CCCTGAGAAG AAATTTCACT CATTCAAGAA GGTATCTCGG TCCATGGGAT ATGGTGAGAA
TGACGTCACT TTAGTATCCT TTCAATCAGT CTCCAAAGGC TACCATGGGG AGTGTGGGAA ACGAGGAGGT TATATGGAGG
TGACTGGCTT TTCTGCAGAA GTGAGGGAGC AAATATATAA AATGGCATCT GTCAACCTTT GCTCTAATAT CTCTGGTCAA
ATTCTTGCAA GCTTGGTCAT GAGTCCACCT AAGGTTGGAG ACGAGTCCTA TGAATCATTC ATGGCTGAGA AGGGAAATAT
TTTGGCATCG CTTGCTAGGC GTGCAAAGAC ACTAGAAGAT GCATTCAACA AACTAGAGGG TGTAACATGC AACAAAGCAG
AAGGGGCAAT GTATCTGTTT CCCCAAATTC GTCTGTCCCA AAAGGCTATC AAAGCTGCAG AGGAGGCAAA AACTGCACCT
GATAACTTCT ATTGCAAGCG GTTGCTTAAT GCCACAGGAG TAGTAGTTGT TCCTGGTTCT GGTTTTGGAC AGGTTCCTGG
CACATGGCAT TTCAGATGCA CCATTTTGCC CCAAGAAGAA AAGATTCCAG CCATTGTCTC CCGTTTGACA GAGTTCCATG
AAAAATTCAT GGATGAGTTC CGTGACTAA

>Vigan.09G186800.01
MRRIVADRFR RLFNRSFLLH RHHHNHNHPP FPASSSLTSH YPFSPYRFFF STPFSSMASD SPFPVTAQNI NPKVLKCEYA
VRGEVVTLAQ NLQKDLLANP GSHPFDEILY CNIGNPQSLG QSPITFFREV LALTDHPAIL DKSETQGLFS ADAIERAWQI
VEQIPGRATG AYSHSQGVKG LRDTIAAGIE ERDGFPANPD DIFMTDGASP AVHNMMQLLI RSENDGILCP IPQYPLYSAS
IALHGGFLVP YYLDEASGWG LEIPELKKQL DAAKSKGINV RALVVINPGN PTGQVLSEEN QRHIVDFCKQ EGLVLLADEV
YQENVYVPEK KFHSFKKVSR SMGYGENDVT LVSFQSVSKG YHGECGKRGG YMEVTGFSAE VREQIYKMAS VNLCSNISGQ
ILASLVMSPP KVGDESYESF MAEKGNILAS LARRAKTLED AFNKLEGVTC NKAEGAMYLF PQIRLSQKAI KAAEEAKTAP
DNFYCKRLLN ATGVVVVPGS GFGQVPGTWH FRCTILPQEE KIPAIVSRLT EFHEKFMDEF RD*