GBrowse Details

Vigan.09G187200.01

Basic Information:
Name: Vigan.09G187200.01
Multiple alignment
Variant Information
Position: Chr09:33270139..33272000 (+ strand)
Length: 1862
Functional Information:
Description: Similar to protein LURP-one-related 11-like. [XP_003547894.2, Glycine max]
InterPro: LURP1-like domain (IPR007612)
Tubby C-terminal-like domain (IPR025659)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.28,0.00,0.03,1.41,10.62,0.40,117.33,0.07
Arabidopsis thaliana homolog: AT3G14260.1
Automatic updates:
Name: NM_001250654 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527543 (LOC100527543), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:33270139..33270182 (+ strand)
Length: 44
Type: five_prime_UTR
Position: Chr09:33270183..33270437 (+ strand)
Length: 255
Type: CDS
Position: Chr09:33270514..33270744 (+ strand)
Length: 231
Type: CDS
Position: Chr09:33271663..33271797 (+ strand)
Length: 135
Type: CDS
Position: Chr09:33271798..33272000 (+ strand)
Length: 203
Type: three_prime_UTR


>Vigan.09G187200.01
TATATGATTA TCCCATTAGT ATATAAAAAC CTTTTATCAG TGACATGCTA CACACAATTT CAACCATGGG AAAAGTTTGT
CCCCAAGCAC TAGAATCTTC TACTACCTGC AGTTTCACTT GCAAGCAAGA AACTTTTACC CTATGGATGA AATCTCTTGT
ACTGAATGGA AAAGGGTGCA CTGTCTTTGA TTCCAATGGC CAGATTGCAT ACAGAGTTGA TAACTACAAC TGCAAGCATA
GAGCAGAAGT TCATCTCATG GACCAAAATG GTGATATTTT GTTCACTATG CTAAAAAAGC AATATAAGTT GTCCAGATTC
TGGGAGGGTT ATAGATTTCC AGCAACAAGA AATGACCACA AAGGACCATG CTTTCGAGTT TCAAAAACTT ATAAGATCTC
TAAAGGGGGT TCGATCTATG AAGTTGAACT TGGTTTGGAC AAAAACCAAC CCTATATTCA TAAAATAGAA AGCAGCACCT
GCAATTCAGC TTGCAAAATA TCTAATGAGG TTGGAGTGGT GGTTGCAGAG CTAAGGAGGA AGAAGTCACA TAGTGGAGTT
GATTTAGGAG ATGATGTTTT CACAATGGTA GTGGAGCAAA ATATAGATCT TTCTCTAGTT ATGGGACTTG TTGTAGCATA
CAATCTTATA AACTCTAAAA TGTAAGTATT TTGGAAGCAA CAGTTTCCAC AACACTAGTG ATTTACATAT TGAGTGAGAA
TTATAGCACA TCGATTGCTA AATACAGTTT CTGTGTTGAG CTTTGCAGAA AAGTGTGCGT GTGTGATTAA TCAATCACAA
AATGATTGAA ATCAAATTTA ATTTCACTTT TGTTTTCTTC CGGAAATGCA GCCTTTGATT CTCTACAT

>Vigan.09G187200.01
ATGCTACACA CAATTTCAAC CATGGGAAAA GTTTGTCCCC AAGCACTAGA ATCTTCTACT ACCTGCAGTT TCACTTGCAA
GCAAGAAACT TTTACCCTAT GGATGAAATC TCTTGTACTG AATGGAAAAG GGTGCACTGT CTTTGATTCC AATGGCCAGA
TTGCATACAG AGTTGATAAC TACAACTGCA AGCATAGAGC AGAAGTTCAT CTCATGGACC AAAATGGTGA TATTTTGTTC
ACTATGCTAA AAAAGCAATA TAAGTTGTCC AGATTCTGGG AGGGTTATAG ATTTCCAGCA ACAAGAAATG ACCACAAAGG
ACCATGCTTT CGAGTTTCAA AAACTTATAA GATCTCTAAA GGGGGTTCGA TCTATGAAGT TGAACTTGGT TTGGACAAAA
ACCAACCCTA TATTCATAAA ATAGAAAGCA GCACCTGCAA TTCAGCTTGC AAAATATCTA ATGAGGTTGG AGTGGTGGTT
GCAGAGCTAA GGAGGAAGAA GTCACATAGT GGAGTTGATT TAGGAGATGA TGTTTTCACA ATGGTAGTGG AGCAAAATAT
AGATCTTTCT CTAGTTATGG GACTTGTTGT AGCATACAAT CTTATAAACT CTAAAATGTA A

>Vigan.09G187200.01
MLHTISTMGK VCPQALESST TCSFTCKQET FTLWMKSLVL NGKGCTVFDS NGQIAYRVDN YNCKHRAEVH LMDQNGDILF
TMLKKQYKLS RFWEGYRFPA TRNDHKGPCF RVSKTYKISK GGSIYEVELG LDKNQPYIHK IESSTCNSAC KISNEVGVVV
AELRRKKSHS GVDLGDDVFT MVVEQNIDLS LVMGLVVAYN LINSKM*