GBrowse Details

Vigan.09G187700.01

Basic Information:
Name: Vigan.09G187700.01
Multiple alignment
Variant Information
Position: Chr09:33305856..33306655 (+ strand)
Length: 800
Functional Information:
Description: Similar to uncharacterized LOC101210921. [XP_004155898.1, Cucumis sativus]
InterPro: Protein of unknown function DUF581 (IPR007650)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,9.98,5.69,0.20,4.34,0.08,6.97
Arabidopsis thaliana homolog: AT1G53885.1, AT1G53903.1
Automatic updates:
Name: NM_001254077 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100816015 (LOC100816015), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:33305856..33305923 (+ strand)
Length: 68
Type: five_prime_UTR
Position: Chr09:33305924..33306210 (+ strand)
Length: 287
Type: CDS
Position: Chr09:33306302..33306488 (+ strand)
Length: 187
Type: CDS
Position: Chr09:33306489..33306655 (+ strand)
Length: 167
Type: three_prime_UTR

>Vigan.09G187700.01 class=Sequence position=Chr09:33305856..33306655 (+ strand)
ATTCATCCAC TTCCATTTTC TTTCTCCTCT ATATTCCATT TTCCTTCTGC GTTATTTCTC CACTCACCAT GCTTCCAAAG
TTCATCAATA TCAGCCCCTT CAAAGCTGAA CACCAAGAAT TGAAGCACAC GAACAAAAGA AGAAAGCATG AGAAATCATT
CGAGAGTAGC AGCATGGATG TTGGTTTGAG ACTTCTCCCT CAAATCACCA GCTCAAAGAC CACATCAAAC GTTCTCTTGA
AATCTGCAAT GAGAAAGCCA AACCAGTTTT CCATCCCTCA AGACTTCTGC TTCCTTAAAA CTTGCAATCT CTGCAATAAG
CAGCTCAGTC CAGACAAAGA TATTTACATG TACAGGTATA TATACATACA TAGTTATTTT AACATTGGAA TTAGCATAGT
GATTTTACGA GGATGTGTTT TGATTTGTGA TATGATGTTT GTGCAGAGGG GATCAAGGTT TCTGCAGTGT AGAGTGCCGC
AACAGACAAA TAGTTTTGGA TGAGATGAAG GAATTAGAAA GCTCAACCAA GCAAATGGTA GCATCTTACA GACAATGTTG
CAGTGAGGCA CGTCAAGAGA CTCGCCTTAT ACTGAAGGAC CTTCGAATGC AGAGACTCAA ATCTAGAGTC TGAACAAAAT
CCTTATCAGT ATAATGAAAA CCATTGGAAA TAATTTTTGT AGATTTGCTG CATAACTATA TGAAACATGT TATACAGTTC
TTCTTTGTTT TTGAGAATTT TGACAGAATG ATGTGACGTG TTGCTCAATA TTTTTTTAAC TGGAAGAAAT ATTAATATTC


>Vigan.09G187700.01
ATTCATCCAC TTCCATTTTC TTTCTCCTCT ATATTCCATT TTCCTTCTGC GTTATTTCTC CACTCACCAT GCTTCCAAAG
TTCATCAATA TCAGCCCCTT CAAAGCTGAA CACCAAGAAT TGAAGCACAC GAACAAAAGA AGAAAGCATG AGAAATCATT
CGAGAGTAGC AGCATGGATG TTGGTTTGAG ACTTCTCCCT CAAATCACCA GCTCAAAGAC CACATCAAAC GTTCTCTTGA
AATCTGCAAT GAGAAAGCCA AACCAGTTTT CCATCCCTCA AGACTTCTGC TTCCTTAAAA CTTGCAATCT CTGCAATAAG
CAGCTCAGTC CAGACAAAGA TATTTACATG TACAGAGGGG ATCAAGGTTT CTGCAGTGTA GAGTGCCGCA ACAGACAAAT
AGTTTTGGAT GAGATGAAGG AATTAGAAAG CTCAACCAAG CAAATGGTAG CATCTTACAG ACAATGTTGC AGTGAGGCAC
GTCAAGAGAC TCGCCTTATA CTGAAGGACC TTCGAATGCA GAGACTCAAA TCTAGAGTCT GAACAAAATC CTTATCAGTA
TAATGAAAAC CATTGGAAAT AATTTTTGTA GATTTGCTGC ATAACTATAT GAAACATGTT ATACAGTTCT TCTTTGTTTT
TGAGAATTTT GACAGAATGA TGTGACGTGT TGCTCAATAT TTTTTTAACT GGAAGAAATA TTAATATTC

>Vigan.09G187700.01
ATGCTTCCAA AGTTCATCAA TATCAGCCCC TTCAAAGCTG AACACCAAGA ATTGAAGCAC ACGAACAAAA GAAGAAAGCA
TGAGAAATCA TTCGAGAGTA GCAGCATGGA TGTTGGTTTG AGACTTCTCC CTCAAATCAC CAGCTCAAAG ACCACATCAA
ACGTTCTCTT GAAATCTGCA ATGAGAAAGC CAAACCAGTT TTCCATCCCT CAAGACTTCT GCTTCCTTAA AACTTGCAAT
CTCTGCAATA AGCAGCTCAG TCCAGACAAA GATATTTACA TGTACAGAGG GGATCAAGGT TTCTGCAGTG TAGAGTGCCG
CAACAGACAA ATAGTTTTGG ATGAGATGAA GGAATTAGAA AGCTCAACCA AGCAAATGGT AGCATCTTAC AGACAATGTT
GCAGTGAGGC ACGTCAAGAG ACTCGCCTTA TACTGAAGGA CCTTCGAATG CAGAGACTCA AATCTAGAGT CTGA

>Vigan.09G187700.01
MLPKFINISP FKAEHQELKH TNKRRKHEKS FESSSMDVGL RLLPQITSSK TTSNVLLKSA MRKPNQFSIP QDFCFLKTCN
LCNKQLSPDK DIYMYRGDQG FCSVECRNRQ IVLDEMKELE SSTKQMVASY RQCCSEARQE TRLILKDLRM QRLKSRV*