GBrowse Details

Vigan.09G197800.01

Basic Information:
Name: Vigan.09G197800.01
Multiple alignment
Variant Information
Position: Chr09:34369641..34374516 (+ strand)
Length: 4876
Functional Information:
Description: Similar to Uncharacterized protein. [Q06A73, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: histone binding (GO:0042393)
InterPro: Zinc finger, PHD-type (IPR001965)
Zinc finger, FYVE/PHD-type (IPR011011)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Zinc finger, PHD-type, conserved site (IPR019786)
Zinc finger, PHD-finger (IPR019787)
Alfin (IPR021998)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:43.54,39.71,19.21,26.20,16.28,18.66,37.89,15.70
Arabidopsis thaliana homolog: AT3G42790.1
Automatic updates:
Name: NM_001250992 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PHD1 (LOC100170700), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:34369641..34369893 (+ strand)
Length: 253
Type: five_prime_UTR
Position: Chr09:34369894..34369987 (+ strand)
Length: 94
Type: CDS
Position: Chr09:34371232..34371264 (+ strand)
Length: 33
Type: CDS
Position: Chr09:34372156..34372384 (+ strand)
Length: 229
Type: CDS
Position: Chr09:34372554..34372689 (+ strand)
Length: 136
Type: CDS
Position: Chr09:34373774..34374043 (+ strand)
Length: 270
Type: CDS
Position: Chr09:34374044..34374516 (+ strand)
Length: 473
Type: three_prime_UTR


>Vigan.09G197800.01
AATTAGTAAA ACATTAAAAA AAAAGAAAAA AAAAAAGAAG AGTTTTCTTT TGTTGTTGTG TTTGTGCAGT GACTGCACTT
TGCAAAATTT TGGTTGCAGA GAGGCAGAGA GAGGGAGCAC TCTCTACACT TTAAGCTCTC AGCTCTGCAA CTTCCAAATC
TCGTTTCCTC TCAAACGACT TCGTTTCGCA CTCTCTTTTG CTTTCATTCT TCTGATTTAG GTTTCAGCAG GAGGACCACC
ACCGGAAGGG GAAATGGACT CGCGCACGTA TAATCCACGC ACGGTCGAAG AGGTTTTTAG GGATTTCAAG GGCCGAAGAG
CTGCTCTCAT CAAAGCCCTT ACCACTGATG TTGAAGATTT CTACAACCAA TGTGATCCAG AGAAGGAGAA TCTGTGCTTG
TATGGCTTTC CCAGTGAACA GTGGGAAGTA AATTTACCTG CTGAAGAAGT ACCACCTGAG CTTCCTGAGC CTGTGCTGGG
CATCAACTTT GCTAGGGATG GCATGCAAGA AAAAGACTGG CTATCTTTAG TTGCTGTCCA TAGTGATGCA TGGTTACTTG
CTATTGCATT CTATTTTGGA GCCAGATTCG GGTTTGATAA AGCTGACAGG AAACGACTTT TCAACATGAT CAACGAATTG
CCAACAATAT TTGAAGTTGT TACTGGTGCA GCAAAGAAGC AAGTTAAGGA GAAGTCTTCT GTTTCAAACC ACAGTGGCAG
CAAGTCTAAG TCCAGCTCTA AGGCACAACG AGCTCCAGAT TCTCAGAGTA GACAGTCAAA GCCATCGCAA CCAAAAGAAG
AGGATGAAGA ACTGGATGAA CAAGATGATG ATGAACATGG AGAGACCTTG TGTGGGGCAT GTGGTGAGCA TTATGGCACT
GATGAATTCT GGATTTGCTG TGACATATGT GAGAAATGGT TCCATGGTAA ATGTGTGAAG ATTACACCAG CTAGGGCAGA
GCATATCAAA CAATACAAGT GTCCCTCATG CAGTAACAAG AGAGCTCGCC CCTGACGAAC ATGAACCAAG TTGTTCCACC
GTTGACAATC ATTGTTGGGG TCTTTGCTGA TCGTGTTCTG CCTTTCTTCC TAGATGTTGC AGTTTATGGA TAGTTTGTGT
TTGGCAGATG TAGGTTTCTT TTCTAGTCTG TAGGATTCTG CTGTGTTTGG TTTTGTTAGT GTCAACTGCA ATTCAGTCGA
CGCCTTGGAT ATGATCAATT TGTAGTTTAT GCATTGTTGA CTTGGGAAAG TGAAGTCTTT TCCTTAATGT CACGTTAAGA
CTAGGTTAAT GAAAAACACA AATTTATTTA AATGGATTTC TAGTTATGTG ATTACTAGTT TGCTAACCCT CCCCCATAAC
TGAAGGACTT TTGGACCTAA TGTTTGGTTT TTTACACCGA GCTTTTAGCC GGCGAAAAGG GTGGCTAAGC TAATGTATCC
AGGAAACTGT TATCTTTATT TTAGTCAATG TGTGCATGCT CCATATCA

>Vigan.09G197800.01
ATGGACTCGC GCACGTATAA TCCACGCACG GTCGAAGAGG TTTTTAGGGA TTTCAAGGGC CGAAGAGCTG CTCTCATCAA
AGCCCTTACC ACTGATGTTG AAGATTTCTA CAACCAATGT GATCCAGAGA AGGAGAATCT GTGCTTGTAT GGCTTTCCCA
GTGAACAGTG GGAAGTAAAT TTACCTGCTG AAGAAGTACC ACCTGAGCTT CCTGAGCCTG TGCTGGGCAT CAACTTTGCT
AGGGATGGCA TGCAAGAAAA AGACTGGCTA TCTTTAGTTG CTGTCCATAG TGATGCATGG TTACTTGCTA TTGCATTCTA
TTTTGGAGCC AGATTCGGGT TTGATAAAGC TGACAGGAAA CGACTTTTCA ACATGATCAA CGAATTGCCA ACAATATTTG
AAGTTGTTAC TGGTGCAGCA AAGAAGCAAG TTAAGGAGAA GTCTTCTGTT TCAAACCACA GTGGCAGCAA GTCTAAGTCC
AGCTCTAAGG CACAACGAGC TCCAGATTCT CAGAGTAGAC AGTCAAAGCC ATCGCAACCA AAAGAAGAGG ATGAAGAACT
GGATGAACAA GATGATGATG AACATGGAGA GACCTTGTGT GGGGCATGTG GTGAGCATTA TGGCACTGAT GAATTCTGGA
TTTGCTGTGA CATATGTGAG AAATGGTTCC ATGGTAAATG TGTGAAGATT ACACCAGCTA GGGCAGAGCA TATCAAACAA
TACAAGTGTC CCTCATGCAG TAACAAGAGA GCTCGCCCCT GA

>Vigan.09G197800.01
MDSRTYNPRT VEEVFRDFKG RRAALIKALT TDVEDFYNQC DPEKENLCLY GFPSEQWEVN LPAEEVPPEL PEPVLGINFA
RDGMQEKDWL SLVAVHSDAW LLAIAFYFGA RFGFDKADRK RLFNMINELP TIFEVVTGAA KKQVKEKSSV SNHSGSKSKS
SSKAQRAPDS QSRQSKPSQP KEEDEELDEQ DDDEHGETLC GACGEHYGTD EFWICCDICE KWFHGKCVKI TPARAEHIKQ
YKCPSCSNKR ARP*