GBrowse Details

Vigan.09G201000.01

Basic Information:
Name: Vigan.09G201000.01
Multiple alignment
Variant Information
Position: Chr09:34765662..34769960 (+ strand)
Length: 4299
Functional Information:
Description: Similar to Lipoxygenase. [V7AQB1, Phaseolus vulgaris]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: protein binding (GO:0005515)
Molecular Function: linoleate 13S-lipoxygenase activity (GO:0016165)
Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Lipoxygenase (IPR000907)
PLAT/LH2 domain (IPR001024)
Lipoxygenase, plant (IPR001246)
Lipase/lipooxygenase, PLAT/LH2 (IPR008976)
Lipoxygenase, C-terminal (IPR013819)
Lipoxygenase, iron binding site (IPR020833)
Lipoxygenase, conserved site (IPR020834)
Lipoxygenase, domain 3 (IPR027433)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.50,1.70,185.86,3.35,1.86,11.45,56.20,3.83
Arabidopsis thaliana homolog: AT1G17420.1, AT1G55020.1, AT1G67560.1, AT1G72520.1, AT3G22400.1, AT3G45140.1
Automatic updates:
Name: KC914354 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata lipoxygenase (Lox) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001250409 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max lipoxygenase-10 (LOX10), mRNA.
PubMed ID: 18624647 NCBI(pubmed)
8587989 NCBI(pubmed)
Status: Known Variant
Name: NM_001317317 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata linoleate 9S-lipoxygenase-like (LOC106773713), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:34765662..34765844 (+ strand)
Length: 183
Type: five_prime_UTR
Position: Chr09:34765845..34766082 (+ strand)
Length: 238
Type: CDS
Position: Chr09:34766313..34766599 (+ strand)
Length: 287
Type: CDS
Position: Chr09:34766697..34766934 (+ strand)
Length: 238
Type: CDS
Position: Chr09:34767401..34767721 (+ strand)
Length: 321
Type: CDS
Position: Chr09:34767818..34767903 (+ strand)
Length: 86
Type: CDS
Position: Chr09:34767988..34768095 (+ strand)
Length: 108
Type: CDS
Position: Chr09:34768268..34768572 (+ strand)
Length: 305
Type: CDS
Position: Chr09:34768654..34768917 (+ strand)
Length: 264
Type: CDS
Position: Chr09:34769034..34769790 (+ strand)
Length: 757
Type: CDS
Position: Chr09:34769791..34769960 (+ strand)
Length: 170
Type: three_prime_UTR


>Vigan.09G201000.01
CAATGTGGAA GATCATGTTT CGCTCATGCT CTTAAAAAAT GACAACTCTT TCTTTCTCAC CATCTAGTTT GGCCTTATAA
ATACTGACCA CCTTCCTCGT CTTTCTCCCA ACCCAGTTTC TCTACTGGAG AAAAACAAAG TGTATAACGT TGTTGTTGTT
GTTGTTGTTT AAGATTTCCA AAGATGTTTT CAGGTGTGAC AGGTCTCGTC AAGCGGGGGC AGAAGCTGAA GGGAACAGTG
GTGTTGATGC ATAAGAATGT GTTGGACGTC AATGCCCTCA CTTCTGCTCA AAGTCCCACC GGCATCATCG GTGGCGCAAT
CGGTGTTGTG GGTGGTGTCA TCGGCACCAC CGTTGACACT CTCACTTCCT TTCTCGGACG ATCTGTGGCT CTCAGGTTGA
TCAGTTCCAC CGCTGCTGAT GCATCTGGAA AAGGAAAGGT GGGAAAACAA ACATATTTGG AAGGTCTTGT TACTTCCTTA
CCAACCTTGG GAGCTGGCCA GTCTGCATTC GATATTCATT TTGAATGGGA CAGTGACATG GGAATTCCTG GAGCATTTTA
CATTGAGAAT TTCATGCAAG TTGAGTTCTT CCTTGTGAGT TTGACTCTTG AAGATATTCC TAACCACGGA ACCATACACT
TTGTTTGCAA CTCATGGATT TACAACGACA AAAAGTACAA ATCTGATCGC ATTTTCTTTG CCAACAAGGC ATACCTTCCA
AGTGAAACAC CAAGTCCACT GGTGAAGTAT AGAGAAGAAG AATTAAAGAC TTTGAGAGGA GATGGAACAG GAGAGCGCAA
AGAACATGAA AGAATCTATG ACTATGATGT CTACAATGAT TTGGGTGATC CTGACTCCAA TGCCAGATTG GCCCGTCCAG
TTCTTGGAGG ATCCACGTTG CCTTATCCTC GCAGGGGAAG AACTGGAAGA AAACCAACTA AGAAAGATTC TAAAAGTGAG
AGTCGCAGTG ACTCTGTATA TCTTCCAAGG GATGAATCAT TTGGTCACTT GAAGTCATCA GATTTCCTTG TTTATATTCT
TAAATCTGCA TCTCAAAATG TGATACCTCA ATTACAATCT GCACTTAGAC TACAATTCAA CCAACCTGAG TTTTCTAGCT
TTAATGATGT TCGTGGACTC TATGATGGTG GAATTAAGTT GCCCACTGAT GCACTTAGCA AGATTAGTCC TATACCATTG
TTCAGTGAAC TATTTCGTAC TGATGGAGAA CAGGTTCTCA AGTTTCCACC ACCTAAAGTA ATTCAAGTGG ACCAGTCTGC
ATGGATGACT GATGAAGAGT TTGCAAGAGA GATGATTGCT GGTGTGAATC CTCATATCAT TAGAAAACTT CAGGAGTTTC
CGCCTAAGAG CAAGCTAGAT AGCCAGCTCT ATGGTGATAA TACCAGTACA ATTACAAGAG AACACTTGCA GCCTAACTTG
GGTGGGCTAA CTGTAGAACA GGCCATCCAA AACAACAGAC TCTTCATACT AGATCACCAT GACACACTTA TTCCATATTT
GAGACGAATC AATGCAACAG AGACAAAGGC CTATGCTACT AGGACCATTA TTTTCTTACA AGATAATGGA ACATTAAAGC
CATTGGCTAT TGAGTTAAGC AAACCACATC CCCAGGGTGA TAATTTTGGT CCTATTAGCA ATGTTTATCT TCCGGCAAAC
CAAGGAGTTG AAGCTTATAT TTGGCTACTT GCAAAGGCTT ATGTGATCGT AAATGACTCT TGCTATCACC AACTTGTCAG
CCATTGGTTA AACACTCATG CAGTTGTTGA GCCATTCGTG ATAGCAACAA ACAGGCATCT CAGTGTGGTT CACCCTGTTC
ACAAACTTCT TCTTCCACAT TATCGTGACA CAATGAACAT AAATGCACTT GCAAGGAATG TCTTGGTCAA TGCAGAGGGT
ATCATAGAAT CAACTTTCTT GTGGGGAGGC TATTCGTTAG AAATGTCTGC AGTTGTATAC AAGGATTGGG TTTTCCCTGA
GCAAGCACTA CCTGCAGATC TTCTTAAGAG AGGTGTGGCT GTTAAGGATT CATCTGCTCC ACACGGCCTT CGTCTTCTAA
TAGAGGACTA TCCTTATGCT GCTGATGGAC TAGAGATATG GGCCACTATC AAGTCATGGG TGCAAGAATA TGTGTCTTTC
TACTACAAGT CTGATGCTGC AATTAAACAA GATACTGAAC TCCAAGCCTT TTGGAAAGAA CTTGTGCAAG TTGGTCATGG
TGACAAGAAA AATGAGCCAT GGTGGGTGAA AATGCAAACT CGTGAAGAGT TGATTGAATC TTGCACCACA CTCATATGGA
CTGCTTCAGC CCTTCATGCA GCTGTGAATT TCGGACAGTA TCCTTATGGT GGCTACATCC TTAACCGACC AACTCTTAGT
AGGCAATTCA TGCCTGAGAT TGGATCTCCT GAGTATGCTG AGCTTGCCAA GAACCCTGAA AAGGTGTACT TGAAAACAAT
CACAGGGAAG AATGAGACCC TTAAAGACCT CACCATTATA GAGGTGTTGT CAAGGCATGC TTCTGATGAG TTGTATCTCG
GACAAAGAGA TGGTGGTGAG TTTTGGACTT ATGATAAGGA GCCATTGGAG GCCTTCAAGA GGTTTGGAAA GAGGTTGGCA
GAAATTGAGC AAAAGCTCAT CCAAAGAAAT AGTGATGAGA CTCTGAGGAA CCGATATGGT CCAGTGAAGA TGCCCTACAC
ATTGCTCTAT CCTTCAAGTG AGGAAGGCTT GACTTTCAGA GGTATTCCTA ACAGTATCTC CATCTAAAGA GGTTTATGAG
TATGTTGCAT TCTAAATAAA CAGAAAAGGA GGAGTTTAAT TCCTTCGTTC CCCCCAGTAT CAGACTTTGT ATTGTGTACG
TTTGATGTTC TGAATTAATA AAATTCTGCA TTTCTACTGT GTATATCATG CTATTAATAG TAACGATAGT TATGGTA

>Vigan.09G201000.01
ATGTTTTCAG GTGTGACAGG TCTCGTCAAG CGGGGGCAGA AGCTGAAGGG AACAGTGGTG TTGATGCATA AGAATGTGTT
GGACGTCAAT GCCCTCACTT CTGCTCAAAG TCCCACCGGC ATCATCGGTG GCGCAATCGG TGTTGTGGGT GGTGTCATCG
GCACCACCGT TGACACTCTC ACTTCCTTTC TCGGACGATC TGTGGCTCTC AGGTTGATCA GTTCCACCGC TGCTGATGCA
TCTGGAAAAG GAAAGGTGGG AAAACAAACA TATTTGGAAG GTCTTGTTAC TTCCTTACCA ACCTTGGGAG CTGGCCAGTC
TGCATTCGAT ATTCATTTTG AATGGGACAG TGACATGGGA ATTCCTGGAG CATTTTACAT TGAGAATTTC ATGCAAGTTG
AGTTCTTCCT TGTGAGTTTG ACTCTTGAAG ATATTCCTAA CCACGGAACC ATACACTTTG TTTGCAACTC ATGGATTTAC
AACGACAAAA AGTACAAATC TGATCGCATT TTCTTTGCCA ACAAGGCATA CCTTCCAAGT GAAACACCAA GTCCACTGGT
GAAGTATAGA GAAGAAGAAT TAAAGACTTT GAGAGGAGAT GGAACAGGAG AGCGCAAAGA ACATGAAAGA ATCTATGACT
ATGATGTCTA CAATGATTTG GGTGATCCTG ACTCCAATGC CAGATTGGCC CGTCCAGTTC TTGGAGGATC CACGTTGCCT
TATCCTCGCA GGGGAAGAAC TGGAAGAAAA CCAACTAAGA AAGATTCTAA AAGTGAGAGT CGCAGTGACT CTGTATATCT
TCCAAGGGAT GAATCATTTG GTCACTTGAA GTCATCAGAT TTCCTTGTTT ATATTCTTAA ATCTGCATCT CAAAATGTGA
TACCTCAATT ACAATCTGCA CTTAGACTAC AATTCAACCA ACCTGAGTTT TCTAGCTTTA ATGATGTTCG TGGACTCTAT
GATGGTGGAA TTAAGTTGCC CACTGATGCA CTTAGCAAGA TTAGTCCTAT ACCATTGTTC AGTGAACTAT TTCGTACTGA
TGGAGAACAG GTTCTCAAGT TTCCACCACC TAAAGTAATT CAAGTGGACC AGTCTGCATG GATGACTGAT GAAGAGTTTG
CAAGAGAGAT GATTGCTGGT GTGAATCCTC ATATCATTAG AAAACTTCAG GAGTTTCCGC CTAAGAGCAA GCTAGATAGC
CAGCTCTATG GTGATAATAC CAGTACAATT ACAAGAGAAC ACTTGCAGCC TAACTTGGGT GGGCTAACTG TAGAACAGGC
CATCCAAAAC AACAGACTCT TCATACTAGA TCACCATGAC ACACTTATTC CATATTTGAG ACGAATCAAT GCAACAGAGA
CAAAGGCCTA TGCTACTAGG ACCATTATTT TCTTACAAGA TAATGGAACA TTAAAGCCAT TGGCTATTGA GTTAAGCAAA
CCACATCCCC AGGGTGATAA TTTTGGTCCT ATTAGCAATG TTTATCTTCC GGCAAACCAA GGAGTTGAAG CTTATATTTG
GCTACTTGCA AAGGCTTATG TGATCGTAAA TGACTCTTGC TATCACCAAC TTGTCAGCCA TTGGTTAAAC ACTCATGCAG
TTGTTGAGCC ATTCGTGATA GCAACAAACA GGCATCTCAG TGTGGTTCAC CCTGTTCACA AACTTCTTCT TCCACATTAT
CGTGACACAA TGAACATAAA TGCACTTGCA AGGAATGTCT TGGTCAATGC AGAGGGTATC ATAGAATCAA CTTTCTTGTG
GGGAGGCTAT TCGTTAGAAA TGTCTGCAGT TGTATACAAG GATTGGGTTT TCCCTGAGCA AGCACTACCT GCAGATCTTC
TTAAGAGAGG TGTGGCTGTT AAGGATTCAT CTGCTCCACA CGGCCTTCGT CTTCTAATAG AGGACTATCC TTATGCTGCT
GATGGACTAG AGATATGGGC CACTATCAAG TCATGGGTGC AAGAATATGT GTCTTTCTAC TACAAGTCTG ATGCTGCAAT
TAAACAAGAT ACTGAACTCC AAGCCTTTTG GAAAGAACTT GTGCAAGTTG GTCATGGTGA CAAGAAAAAT GAGCCATGGT
GGGTGAAAAT GCAAACTCGT GAAGAGTTGA TTGAATCTTG CACCACACTC ATATGGACTG CTTCAGCCCT TCATGCAGCT
GTGAATTTCG GACAGTATCC TTATGGTGGC TACATCCTTA ACCGACCAAC TCTTAGTAGG CAATTCATGC CTGAGATTGG
ATCTCCTGAG TATGCTGAGC TTGCCAAGAA CCCTGAAAAG GTGTACTTGA AAACAATCAC AGGGAAGAAT GAGACCCTTA
AAGACCTCAC CATTATAGAG GTGTTGTCAA GGCATGCTTC TGATGAGTTG TATCTCGGAC AAAGAGATGG TGGTGAGTTT
TGGACTTATG ATAAGGAGCC ATTGGAGGCC TTCAAGAGGT TTGGAAAGAG GTTGGCAGAA ATTGAGCAAA AGCTCATCCA
AAGAAATAGT GATGAGACTC TGAGGAACCG ATATGGTCCA GTGAAGATGC CCTACACATT GCTCTATCCT TCAAGTGAGG
AAGGCTTGAC TTTCAGAGGT ATTCCTAACA GTATCTCCAT CTAA

>Vigan.09G201000.01
MFSGVTGLVK RGQKLKGTVV LMHKNVLDVN ALTSAQSPTG IIGGAIGVVG GVIGTTVDTL TSFLGRSVAL RLISSTAADA
SGKGKVGKQT YLEGLVTSLP TLGAGQSAFD IHFEWDSDMG IPGAFYIENF MQVEFFLVSL TLEDIPNHGT IHFVCNSWIY
NDKKYKSDRI FFANKAYLPS ETPSPLVKYR EEELKTLRGD GTGERKEHER IYDYDVYNDL GDPDSNARLA RPVLGGSTLP
YPRRGRTGRK PTKKDSKSES RSDSVYLPRD ESFGHLKSSD FLVYILKSAS QNVIPQLQSA LRLQFNQPEF SSFNDVRGLY
DGGIKLPTDA LSKISPIPLF SELFRTDGEQ VLKFPPPKVI QVDQSAWMTD EEFAREMIAG VNPHIIRKLQ EFPPKSKLDS
QLYGDNTSTI TREHLQPNLG GLTVEQAIQN NRLFILDHHD TLIPYLRRIN ATETKAYATR TIIFLQDNGT LKPLAIELSK
PHPQGDNFGP ISNVYLPANQ GVEAYIWLLA KAYVIVNDSC YHQLVSHWLN THAVVEPFVI ATNRHLSVVH PVHKLLLPHY
RDTMNINALA RNVLVNAEGI IESTFLWGGY SLEMSAVVYK DWVFPEQALP ADLLKRGVAV KDSSAPHGLR LLIEDYPYAA
DGLEIWATIK SWVQEYVSFY YKSDAAIKQD TELQAFWKEL VQVGHGDKKN EPWWVKMQTR EELIESCTTL IWTASALHAA
VNFGQYPYGG YILNRPTLSR QFMPEIGSPE YAELAKNPEK VYLKTITGKN ETLKDLTIIE VLSRHASDEL YLGQRDGGEF
WTYDKEPLEA FKRFGKRLAE IEQKLIQRNS DETLRNRYGP VKMPYTLLYP SSEEGLTFRG IPNSISI*