GBrowse Details

Vigan.09G203300.01

Basic Information:
Name: Vigan.09G203300.01
Multiple alignment
Variant Information
Position: Chr09:34922208..34925034 (- strand)
Length: 2827
Functional Information:
Description: Similar to Ribosomal protein L34. [V7AQD1, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L34 (IPR000271)
Ribosomal protein L34, conserved site (IPR020939)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.20,23.80,21.83,13.21,29.79,41.89,15.30,12.39
Arabidopsis thaliana homolog: AT3G13882.2
Automatic updates:
Name: NM_001248067 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305667 (LOC100305667), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:34922208..34922608 (- strand)
Length: 401
Type: three_prime_UTR
Position: Chr09:34922609..34922681 (- strand)
Length: 73
Type: CDS
Position: Chr09:34924169..34924268 (- strand)
Length: 100
Type: CDS
Position: Chr09:34924681..34924906 (- strand)
Length: 226
Type: CDS
Position: Chr09:34924907..34925034 (- strand)
Length: 128
Type: five_prime_UTR


>Vigan.09G203300.01
AAAAAACCCA AATTGAAAAG AGGCAAAACT CCGATCCATG GAGATGGAGG TTGGTGTTTG GTGTTGGCGC ATTGCTTAGG
TTGGGTTAGG TTAGGGTTTA TGAAGCAAAG CTTTGAGTGA AACCAACAAT GGCGTCGAAT AGCGTTCTCA GAAGTGGGGC
TTCCTTGTTG AATCGCCTTT CCAAATCGCT TCCTCTTCAT TCCAATACCC CTCAACTTCA ATCTCATTTC CTCTTCCCCT
CTCTCTCTAG GCTCCCCTCT GCCATTTCTC CCCAAAACGA CGTCGAATTT CCCCACAAAC AAGGCTTTCT CTACCCCTGT
GGCCTCCCCT CTCTCCGCTT CTTCTTACCT CACGGGGATG CTCCTTCATC AGATGAGCCC ATGCTTTTGT TCCCCAAAAG
GACATTTCAA CCTAGTCTCA TTAAACGAAA GAGGAACCAT GGATTTTTTG CTCGGAAAGC GACTAAGGGT GGCAGAAAAG
TAATTGCTCG AAGAATAGCC AAGGGCCGGT TTAGGATTAC AGCTTAGTAT CATTGCATTG ACATTGGAGT TAAACTTTGA
ATTTAGAAAC TTAGTGCACT TCATGGTAAG GCCCCCTCAG GGTGAACCTG ACATTGCTAC CTAAAAGAGC TCATTTTTTT
TGGTTGGGGT GTGGGGTTGG AGTTTTATTA AGTATAGTAT GCGATGAATA ACTTTTCAGG CAACTGTTGT GCATGGATGT
GTTAACATTC TGTTTATTTC TATTTGAAAT TTTGGTCAGT AGTTGCAATA ATTTGTAACT CTAGTATTTA CAAATAATCT
AGCTTTATTT GGTGCAAAGA AAACGAGTTT GTTTTTGAGT TGACTAGTTT GAGTTTGACA GCCTTAGAAA GTCAACTAGA
AACATAAACG AGTTTGACAG CCTCATGTGT TTGTTTTCTG TTTCCAAA

>Vigan.09G203300.01
ATGGCGTCGA ATAGCGTTCT CAGAAGTGGG GCTTCCTTGT TGAATCGCCT TTCCAAATCG CTTCCTCTTC ATTCCAATAC
CCCTCAACTT CAATCTCATT TCCTCTTCCC CTCTCTCTCT AGGCTCCCCT CTGCCATTTC TCCCCAAAAC GACGTCGAAT
TTCCCCACAA ACAAGGCTTT CTCTACCCCT GTGGCCTCCC CTCTCTCCGC TTCTTCTTAC CTCACGGGGA TGCTCCTTCA
TCAGATGAGC CCATGCTTTT GTTCCCCAAA AGGACATTTC AACCTAGTCT CATTAAACGA AAGAGGAACC ATGGATTTTT
TGCTCGGAAA GCGACTAAGG GTGGCAGAAA AGTAATTGCT CGAAGAATAG CCAAGGGCCG GTTTAGGATT ACAGCTTAG

>Vigan.09G203300.01
MASNSVLRSG ASLLNRLSKS LPLHSNTPQL QSHFLFPSLS RLPSAISPQN DVEFPHKQGF LYPCGLPSLR FFLPHGDAPS
SDEPMLLFPK RTFQPSLIKR KRNHGFFARK ATKGGRKVIA RRIAKGRFRI TA*