GBrowse Details

Vigan.09G204000.01

Basic Information:
Name: Vigan.09G204000.01
Multiple alignment
Variant Information
Position: Chr09:34975483..34979973 (+ strand)
Length: 4491
Functional Information:
Description: Similar to hydrolase C777.06c-like isoform X1. [XP_003531613.1, Glycine max]
GO: Molecular Function: hydrolase activity (GO:0016787)
InterPro: Beta-lactamase-like (IPR001279)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.82,2.89,14.78,14.27,16.58,8.47,9.62,12.41
Arabidopsis thaliana homolog: AT3G13800.1
Automatic updates:
Name: NM_001255877 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative hydrolase C777.06c-like (LOC100786919), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:34975483..34975556 (+ strand)
Length: 74
Type: five_prime_UTR
Position: Chr09:34975557..34975677 (+ strand)
Length: 121
Type: CDS
Position: Chr09:34975882..34976015 (+ strand)
Length: 134
Type: CDS
Position: Chr09:34976129..34976241 (+ strand)
Length: 113
Type: CDS
Position: Chr09:34976800..34976841 (+ strand)
Length: 42
Type: CDS
Position: Chr09:34977347..34977402 (+ strand)
Length: 56
Type: CDS
Position: Chr09:34977529..34977605 (+ strand)
Length: 77
Type: CDS
Position: Chr09:34978576..34978695 (+ strand)
Length: 120
Type: CDS
Position: Chr09:34978863..34978939 (+ strand)
Length: 77
Type: CDS
Position: Chr09:34979035..34979098 (+ strand)
Length: 64
Type: CDS
Position: Chr09:34979214..34979264 (+ strand)
Length: 51
Type: CDS
Position: Chr09:34979344..34979392 (+ strand)
Length: 49
Type: CDS
Position: Chr09:34979612..34979730 (+ strand)
Length: 119
Type: CDS
Position: Chr09:34979731..34979973 (+ strand)
Length: 243
Type: three_prime_UTR


>Vigan.09G204000.01
ACACAACACA CGTGTGTAAT TGTTCGTGTG ACTGACACAG ACAAACACTG CACAGACATT GAATCGATCA ATCAATGGTG
CTTGCGTCCA TTCGTCTTTT TCCTTCTCCA TTCCTCGCTT TCGCTCCTCG TCGCTCTCCA TATTCATGGC GCCCTCGTCC
CTCTTCCGTC GCCGCCTTCT CTTCTCTCCA CTCCTCGGCT TCTAAGGGAG ACGGCGGAGT GGAACTAGGT GGTGATCAAA
GACAAGCAGA AGTTATTTTT TTGGGGACTG GAACCAGTGA AGGGGTTCCT CGTGTTAGTT GCTTGACTAA CCCTTTAATT
AAATGTGAGG TGTGTTCAAA AGCTGCCCAA CCGGGAAATA AGAATAGGAG ACTTAACACA AGCATTCTCA TTCGTCACCC
CAATTCTTCA GGAACACAGA ATATTCTTAT AGATGCTGGA AAATTTTTCT ATCACAGTGC TCTCCGGTGG TTTCCTGCTT
ATGGGATAAG AACAATAGAT GCTGTCATTA TTACTCATTC ACATGCTGAC GCAATTGGAG GTCTTGATGA TCTCAGAGAT
TGGACAAACA ATGTTCAGCC TCATATTCCA ATATATGTAA CCAAACGAGA CTTTGAGGTG ATGACAAAGA CCCATTATTA
TTTAGTAGAT ACTAGTGTTA TCTTACCTGG TGCCAAAGTC TCAGAGTTGC AATTCAAAAT CATATCGGAA GAATCATTTT
TTGTACACGG ACTGAAGATT ACCCCATTAC CAGTTTGGCA CGGCCAGAAT TATAGGTCCC TTGGTTTTCG TTTTGGTAAT
ATCTGTTACA TTAGTGATGT TAGTGAAATT CCTGAAGAAA CTTACCCACT TCTAAAGGAC TGTGAAATTC TAATCCTGGA
TGGATTAAGA CCTGATCGTT CTACTTCCAC ACATTTTGGA CTTCCAAGGG CGTTGGAGGA AGTGCGAAAA ATTCAACCCA
AAAGAACACT TTTTACTGGT ATGATGCATC TGGTGGATCA TGAAAAAGTG AATGACTACC TTGCGAGCTT ATTGGAGTCT
GAGGGTCTTG ATGCACAACT GAGCTATGAT GGACTTCGTA TACCAGTCAG ACTCTAGATT TATACAACCT CAATAATTAT
TTTTTTCCCG AAAGAGAAGT TATTAAACAA TACATTTAAA TGATTTTACA AGTTCACACA TTCTGCATGC TACTGCAACT
ATTCCACCTT CTTCCCATCC ACTTGTCATT CTTATTTCCT TGTCTCTATT AGCGACAAGC AACACTTATA CCATAATGTA
ACAGGATTTT TTCCCCTTAC AATGAAATAT TTTATTGTGT AGTGAATTAT TATTTGGTCA 

>Vigan.09G204000.01
ATGGTGCTTG CGTCCATTCG TCTTTTTCCT TCTCCATTCC TCGCTTTCGC TCCTCGTCGC TCTCCATATT CATGGCGCCC
TCGTCCCTCT TCCGTCGCCG CCTTCTCTTC TCTCCACTCC TCGGCTTCTA AGGGAGACGG CGGAGTGGAA CTAGGTGGTG
ATCAAAGACA AGCAGAAGTT ATTTTTTTGG GGACTGGAAC CAGTGAAGGG GTTCCTCGTG TTAGTTGCTT GACTAACCCT
TTAATTAAAT GTGAGGTGTG TTCAAAAGCT GCCCAACCGG GAAATAAGAA TAGGAGACTT AACACAAGCA TTCTCATTCG
TCACCCCAAT TCTTCAGGAA CACAGAATAT TCTTATAGAT GCTGGAAAAT TTTTCTATCA CAGTGCTCTC CGGTGGTTTC
CTGCTTATGG GATAAGAACA ATAGATGCTG TCATTATTAC TCATTCACAT GCTGACGCAA TTGGAGGTCT TGATGATCTC
AGAGATTGGA CAAACAATGT TCAGCCTCAT ATTCCAATAT ATGTAACCAA ACGAGACTTT GAGGTGATGA CAAAGACCCA
TTATTATTTA GTAGATACTA GTGTTATCTT ACCTGGTGCC AAAGTCTCAG AGTTGCAATT CAAAATCATA TCGGAAGAAT
CATTTTTTGT ACACGGACTG AAGATTACCC CATTACCAGT TTGGCACGGC CAGAATTATA GGTCCCTTGG TTTTCGTTTT
GGTAATATCT GTTACATTAG TGATGTTAGT GAAATTCCTG AAGAAACTTA CCCACTTCTA AAGGACTGTG AAATTCTAAT
CCTGGATGGA TTAAGACCTG ATCGTTCTAC TTCCACACAT TTTGGACTTC CAAGGGCGTT GGAGGAAGTG CGAAAAATTC
AACCCAAAAG AACACTTTTT ACTGGTATGA TGCATCTGGT GGATCATGAA AAAGTGAATG ACTACCTTGC GAGCTTATTG
GAGTCTGAGG GTCTTGATGC ACAACTGAGC TATGATGGAC TTCGTATACC AGTCAGACTC TAG

>Vigan.09G204000.01
MVLASIRLFP SPFLAFAPRR SPYSWRPRPS SVAAFSSLHS SASKGDGGVE LGGDQRQAEV IFLGTGTSEG VPRVSCLTNP
LIKCEVCSKA AQPGNKNRRL NTSILIRHPN SSGTQNILID AGKFFYHSAL RWFPAYGIRT IDAVIITHSH ADAIGGLDDL
RDWTNNVQPH IPIYVTKRDF EVMTKTHYYL VDTSVILPGA KVSELQFKII SEESFFVHGL KITPLPVWHG QNYRSLGFRF
GNICYISDVS EIPEETYPLL KDCEILILDG LRPDRSTSTH FGLPRALEEV RKIQPKRTLF TGMMHLVDHE KVNDYLASLL
ESEGLDAQLS YDGLRIPVRL *