VIGGS:GBrowse

Vigan.09G209700.01

Basic Information:

Name:	Vigan.09G209700.01 Multiple alignment Variant Information
Position:	Chr09:35470635..35473241 (- strand)
Length:	2607

Functional Information:

Description:	Similar to Uncharacterized protein. [V7BZL0, Phaseolus vulgaris]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein L28e (IPR002672)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:100.61,109.04,155.04,77.77,202.30,455.03,256.82,108.14

Automatic updates:

Name:	NM_001251082 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100499921 (LOC100499921), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001251471 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306153 (LOC100306153), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:35470635..35471180 (- strand)
Length:	546
Type:	three_prime_UTR

Position:	Chr09:35471181..35471321 (- strand)
Length:	141
Type:	CDS

Position:	Chr09:35472506..35472669 (- strand)
Length:	164
Type:	CDS

Position:	Chr09:35472943..35473090 (- strand)
Length:	148
Type:	CDS

Position:	Chr09:35473091..35473241 (- strand)
Length:	151
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.09G209700.01
CAACACTTCA CGGATCTTGA TTACGGATTA ATGGGTCGAA CTTCCGAACC CGGTTACTTC ATTTTGATAA ACTTAGGGTT
TCTTCCCTGT CCTATATAAA TATAGAGCCT AACGCAAAAC CCTAGTTGTG AGTTGCAGGA AGAAGGAGCA AATGGCGACT
GTTCCAGGGC AACTTGTGTG GGAGATCGTG AAGAAGAACA ACTCTTTCTT AGTGAAACAG TTCGGAAGAG GGACTCAGAG
CGTCGAATTC AGCAGAGAGT CCAACAATCT CTACAACCTC AATTCGTTCA AATTCTCTGG TTTGGCAAAC AAGAAAACTG
TTACCGTTCA GCCTGCTGGT AAGGATCTAT CTGTTTTGTT GGCTACAACA AAGACAAAGA AGCAGAACAA GCCTGCTTCA
TTGCTCCACA AATCTGTGAT GAAGAAGGAG TTCCGTAGGA TGGCAAAGGC TGTTGAAAAT CAGGTTGCGG ATAATTACTA
CAGGCCTGAT CTTAAGAAGG CCGCCCTTGC AAGGTTGAGT GCTGTTAACA GAAGCCTCAA AGTTGCCAAG TCTGGTGTCA
AGAAGAGGAA CAGACAGGCC GTGAAGATCT CTGGTAGGAA GTGAAAGGGA ATTGAGACCG AGTTAACTTG CATTCAACCC
TCGTTTTTGC CCTCTTTTTG TGATTTTAGA ACTCCTGTCT AAATTTCCTG AGTTGTTTTT GAATATGCAA TTATTTATGA
AGTACTCAAT GTGAACTCGA ACCAGTATTT CATAGCTTTC ACCTTTAATT GTTTCTTGGT ATAATCGTCT TATGGTTGTT
TCTTGAAGGT CAGCTGACAA AGTGGCTGGT TTTTATTGCT TGTTATTAGC ATTAAAATCC ATATTTAGAA AGATAATTTT
ACTTTTGCTT CATTCTTCAC TCTGATAATG AACGCAATTT GTTTTAGAAT TTTAAACCGG AATTGGCGCG AAGTCTGGGG
TTAGTGAAAC ATGATAAACA CGATTTGGCA AATGGTTGTT TTTTGCGATG TAAATATTGA TTTGTTAATC ACATTAAAAA
ACGGGGATCT TTTTGGTGTG ATTGATTTAC AAACTGTAAT ATAGGGATCT CAGTTGCTAA GCAAAGTGGT TTTGCCATTC
CGGTATGATT TTTCGTTGAA GGAAAAGATG

[show][hide][copy]CDS

>Vigan.09G209700.01
ATGGCGACTG TTCCAGGGCA ACTTGTGTGG GAGATCGTGA AGAAGAACAA CTCTTTCTTA GTGAAACAGT TCGGAAGAGG
GACTCAGAGC GTCGAATTCA GCAGAGAGTC CAACAATCTC TACAACCTCA ATTCGTTCAA ATTCTCTGGT TTGGCAAACA
AGAAAACTGT TACCGTTCAG CCTGCTGGTA AGGATCTATC TGTTTTGTTG GCTACAACAA AGACAAAGAA GCAGAACAAG
CCTGCTTCAT TGCTCCACAA ATCTGTGATG AAGAAGGAGT TCCGTAGGAT GGCAAAGGCT GTTGAAAATC AGGTTGCGGA
TAATTACTAC AGGCCTGATC TTAAGAAGGC CGCCCTTGCA AGGTTGAGTG CTGTTAACAG AAGCCTCAAA GTTGCCAAGT
CTGGTGTCAA GAAGAGGAAC AGACAGGCCG TGAAGATCTC TGGTAGGAAG TGA

[show][hide][copy]PROTEIN

>Vigan.09G209700.01
MATVPGQLVW EIVKKNNSFL VKQFGRGTQS VEFSRESNNL YNLNSFKFSG LANKKTVTVQ PAGKDLSVLL ATTKTKKQNK
PASLLHKSVM KKEFRRMAKA VENQVADNYY RPDLKKAALA RLSAVNRSLK VAKSGVKKRN RQAVKISGRK *