GBrowse Details

Vigan.09G215000.01

Basic Information:
Name: Vigan.09G215000.01
Multiple alignment
Variant Information
Position: Chr09:35915825..35917915 (+ strand)
Length: 2091
Functional Information:
Description: Similar to aquaporin TIP2-1-like. [XP_004516306.1, Cicer arietinum]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Major intrinsic protein (IPR000425)
Major intrinsic protein, conserved site (IPR022357)
Aquaporin-like (IPR023271)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.69,3.53,44.45,49.27,1.95,29.28,111.40,188.55
Automatic updates:
Name: NM_001250472 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aquaporin TIP2-3 (LOC100306092), mRNA.
PubMed ID: 30634702 NCBI(pubmed)
27818669 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr09:35915825..35915982 (+ strand)
Length: 158
Type: five_prime_UTR
Position: Chr09:35915983..35916109 (+ strand)
Length: 127
Type: CDS
Position: Chr09:35916365..35916615 (+ strand)
Length: 251
Type: CDS
Position: Chr09:35917370..35917738 (+ strand)
Length: 369
Type: CDS
Position: Chr09:35917739..35917915 (+ strand)
Length: 177
Type: three_prime_UTR


>Vigan.09G215000.01
CCAAAACTTA ACATTGTATT TGATAATTAA CTTCTGCTGC ATATATATAT ATATAACCCC AACAGAGAAG CTTTTTGTAC
TACTACCTTT CTTATTTGTA ACATTTCCTT GTCTATCCTG TCCTCTAATT TTAACAGTTC CCCTAGAAAG TTCTGAAGAT
GGGTGGCATT GCCTTCGGAC GTTTGGATGA TTCTTTCAGT TTAAGCTCAA TCAAGGCCTA TATTGCTGAG TTCCATTCAA
CCTTGCTCTT TGTTTTTGCC GGTGTTGGTT CAGCCATAGC CTATGGTAAG TTGACATCAG ATGCAGCACT CGATCCTGCT
GGGTTACTGG CAGTTGCTAT TTGCCACGGT TTTGCACTTT TTGTTGCAGT TTCTGTTGGT GCCAACATCT CTGGTGGCCA
TGTCAACCCT GCTGTGACTT TTGGATTGGC TCTTGGTGGC CACATCACCA TCCTCACAGG CATATTCTAC TGGATTGCAC
AGCTTCTTGG CTCCATCGTG GCCTGTTTTC TTCTCAGCTA TGTCACAGGA GGTTTGGCAA TTCCAGTTCA CAGTGTGGCT
TCTGGGGTTG GAGTTGTTGA AGGAGTTGTT ACAGAGATCA TAATCACATT TGGTTTGGTG TACACTGTAT ACGCCACAGC
AGCTGATCCT AAGAAGGGTT CATTGGGCAC GATTGCACCC ATTGCCATTG GTTTCATTGT TGGTGCGAAC ATCTTGGCAG
CAGGGCCATT CTCAGGTGGC TCAATGAACC CTGCACGCTC CTTTGGCCCT GCAGTTGTGA GTGGTGACTT CCATGACAAC
TGGATCTACT GGGTCGGACC TCTTGTCGGT GGTGGTTTGG CTGGCCTCAT CTATGGCAAT GTCTTCATTC GCTCTGACCA
TGCACCTCTT TCCACTGAAT TTTGACTCCA TTGGGAGATC ATGGCCTCTG TAATATTCAT GTTTCTTCAT AATAAAAGTA
GGATAAGCAA TTCTTGCTTT TCTTGCTTTT TCTAGTGTAT GTTTTTCCTT CTTGTAATTT ATTTGTAAAG TGTGCTACTG
TTTAATTTGG TGAGAATTCA AAGAGGTTGG TGGTGTGCAG AA

>Vigan.09G215000.01
ATGGGTGGCA TTGCCTTCGG ACGTTTGGAT GATTCTTTCA GTTTAAGCTC AATCAAGGCC TATATTGCTG AGTTCCATTC
AACCTTGCTC TTTGTTTTTG CCGGTGTTGG TTCAGCCATA GCCTATGGTA AGTTGACATC AGATGCAGCA CTCGATCCTG
CTGGGTTACT GGCAGTTGCT ATTTGCCACG GTTTTGCACT TTTTGTTGCA GTTTCTGTTG GTGCCAACAT CTCTGGTGGC
CATGTCAACC CTGCTGTGAC TTTTGGATTG GCTCTTGGTG GCCACATCAC CATCCTCACA GGCATATTCT ACTGGATTGC
ACAGCTTCTT GGCTCCATCG TGGCCTGTTT TCTTCTCAGC TATGTCACAG GAGGTTTGGC AATTCCAGTT CACAGTGTGG
CTTCTGGGGT TGGAGTTGTT GAAGGAGTTG TTACAGAGAT CATAATCACA TTTGGTTTGG TGTACACTGT ATACGCCACA
GCAGCTGATC CTAAGAAGGG TTCATTGGGC ACGATTGCAC CCATTGCCAT TGGTTTCATT GTTGGTGCGA ACATCTTGGC
AGCAGGGCCA TTCTCAGGTG GCTCAATGAA CCCTGCACGC TCCTTTGGCC CTGCAGTTGT GAGTGGTGAC TTCCATGACA
ACTGGATCTA CTGGGTCGGA CCTCTTGTCG GTGGTGGTTT GGCTGGCCTC ATCTATGGCA ATGTCTTCAT TCGCTCTGAC
CATGCACCTC TTTCCACTGA ATTTTGA

>Vigan.09G215000.01
MGGIAFGRLD DSFSLSSIKA YIAEFHSTLL FVFAGVGSAI AYGKLTSDAA LDPAGLLAVA ICHGFALFVA VSVGANISGG
HVNPAVTFGL ALGGHITILT GIFYWIAQLL GSIVACFLLS YVTGGLAIPV HSVASGVGVV EGVVTEIIIT FGLVYTVYAT
AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR SFGPAVVSGD FHDNWIYWVG PLVGGGLAGL IYGNVFIRSD
HAPLSTEF*