GBrowse Details

Vigan.09G216300.01

Basic Information:
Name: Vigan.09G216300.01
Multiple alignment
Variant Information
Position: Chr09:36017451..36020551 (- strand)
Length: 3101
Functional Information:
Description: Similar to thylakoid membrane phosphoprotein 14 kDa, chloroplastic-like isoform X2. [XP_004506839.1, Cicer arietinum]
InterPro: Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain (IPR025564)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.38,4.35,41.02,123.58,12.55,46.57,4.07,40.09
Arabidopsis thaliana homolog: AT1G52220.1
Automatic updates:
Name: NM_001248818 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306487 (LOC100306487), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249588 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305776 (LOC100305776), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:36017451..36017803 (- strand)
Length: 353
Type: three_prime_UTR
Position: Chr09:36017804..36017858 (- strand)
Length: 55
Type: CDS
Position: Chr09:36018210..36018247 (- strand)
Length: 38
Type: CDS
Position: Chr09:36018340..36018402 (- strand)
Length: 63
Type: CDS
Position: Chr09:36019136..36019222 (- strand)
Length: 87
Type: CDS
Position: Chr09:36019321..36019415 (- strand)
Length: 95
Type: CDS
Position: Chr09:36020244..36020343 (- strand)
Length: 100
Type: CDS
Position: Chr09:36020344..36020551 (- strand)
Length: 208
Type: five_prime_UTR


>Vigan.09G216300.01
ACTCCTTGCA GTGGAATATT CTGTCTTACT TAAACGTCTT TTGCAGCAGT AGAGTAATAC AATGACAGTA CAAACAAGGA
AATCTTACTT TTGATTTCTG TCATCTGATT ATCATTGGAG GCTCTGATTT CTGTCATCTG ATTATCATAG GAGGGGAAAC
TTAGCCAAAG TTGTTGTCTT TTTTGTAATT TTGATTAGTG TTGTTCAAAT GGCTTCCATT GTTGCAAGCT TGTTGCCACC
ATTGCTGCTC CCATCTAGAA ATTCACAGCC AGGAACCTTC CCAACTTTCC CTGTTTCTCT TCTTTCAGGG AGACGGAGTA
ATGTTTCTTT GGTTGTGAAG GCTTCTGGGG AAAGTTCTGA ATCTGCAACT TCCCTTACTG TTTTTAAGTC CGTACAGAAT
GTTTGGGATC AACCTGAAGA CCGTCTGGGA CTTTTTGGGT TGGGATTTGC AGCTGTAGCA GCGTTTTGGG CGTCAACAAA
TTTGGTTGCG GCCATTGACA AATTACCACT TTTCCCAGCT GTATTTGAAC TAATTGGAAT ATTTTACTCT GTGTGGTTTA
CTTATCGCTA TCTCGTATTC AAGCCTGACC GGGAAGAGCT TTTTCAAATC TTGAACAAGT CAGCAACAGA TATCTTGGGC
CAGTAAAATG TGCTACCAAA ATGCTATGCT AGATTGGGAG GAAAAGCTGG TTAAGGAGAG GGAGGGGAAA GAGGGATTTG
ACTGTCATCA CTCCTATGCA AACTTCAATG CAAGGATTAA CTATATGTTT AAAGATCAGT ACATTATTAC ATCAATGAAT
TAAAGCTTAC TTTTTTGTGC TGGGTTAGCT TCTTTGCATA TAATTTTTAA TGAAGTTCCC TTGAGCATAA AACTAATAAG
AGTAATACTA GCCTAAATAA TGCCCAGAAA AAAGGAATTG TTCACTTGAG TGCAGCAATC AATAGGTGAA GAACAGGGTT
TTAAAAGATG GTCTATGTTT GATCACAATT TTAGCCACT

>Vigan.09G216300.01
ATGGCTTCCA TTGTTGCAAG CTTGTTGCCA CCATTGCTGC TCCCATCTAG AAATTCACAG CCAGGAACCT TCCCAACTTT
CCCTGTTTCT CTTCTTTCAG GGAGACGGAG TAATGTTTCT TTGGTTGTGA AGGCTTCTGG GGAAAGTTCT GAATCTGCAA
CTTCCCTTAC TGTTTTTAAG TCCGTACAGA ATGTTTGGGA TCAACCTGAA GACCGTCTGG GACTTTTTGG GTTGGGATTT
GCAGCTGTAG CAGCGTTTTG GGCGTCAACA AATTTGGTTG CGGCCATTGA CAAATTACCA CTTTTCCCAG CTGTATTTGA
ACTAATTGGA ATATTTTACT CTGTGTGGTT TACTTATCGC TATCTCGTAT TCAAGCCTGA CCGGGAAGAG CTTTTTCAAA
TCTTGAACAA GTCAGCAACA GATATCTTGG GCCAGTAA

>Vigan.09G216300.01
MASIVASLLP PLLLPSRNSQ PGTFPTFPVS LLSGRRSNVS LVVKASGESS ESATSLTVFK SVQNVWDQPE DRLGLFGLGF
AAVAAFWAST NLVAAIDKLP LFPAVFELIG IFYSVWFTYR YLVFKPDREE LFQILNKSAT DILGQ*